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https://github.com/arve0/microscopestitching
Automatic merge/stitching of regular spaced images
https://github.com/arve0/microscopestitching
Last synced: 8 days ago
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Automatic merge/stitching of regular spaced images
- Host: GitHub
- URL: https://github.com/arve0/microscopestitching
- Owner: arve0
- License: mit
- Created: 2015-04-29T09:06:23.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2018-04-04T17:17:33.000Z (over 6 years ago)
- Last Synced: 2024-08-10T23:19:29.394Z (3 months ago)
- Language: Jupyter Notebook
- Size: 5.52 MB
- Stars: 5
- Watchers: 3
- Forks: 2
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# microscopestitching
[![build-status-image]][travis]
[![pypi-version]][pypi]
[![wheel]][pypi]
## Overview
This software aims to be a reliable way to stitch your microscope images. To
get good results, a couple of assumptions should be true about your dataset:
- images are regular spaced
- images are of same size
- side by side images have translation only in one dimension
- (if not, check your scanning mirror rotation)
- scale in edge of images are constant
## Installation
Install using `pip`...
```bash
pip install microscopestitching
```
## Example
```python
from microscopestitching import stitch
from skimage.io import imsave
images = []
for i in range(50):
row = i // 10
col = i % 10
images.append(('%d.png' % i, row, col))
merged = stitch(images)
imsave('merged.png', merged)
```
See also [notebook examples](http://nbviewer.ipython.org/github/arve0/microscopestitching/blob/master/notebooks/).
## API reference
API reference is at http://microscopestitching.rtfd.org.
## Development
Install dependencies and link development version of microscopestitching to pip:
```bash
git clone https://github.com/arve0/microscopestitching
cd microscopestitching
pip install -r requirements.txt # install dependencies and microscopestitching-package
```
### Testing
```bash
tox
```
### Build documentation locally
To build the documentation:
```bash
pip install -r docs/requirements.txt
make docs
```
[build-status-image]: https://secure.travis-ci.org/arve0/microscopestitching.png?branch=master
[travis]: http://travis-ci.org/arve0/microscopestitching?branch=master
[pypi-version]: https://img.shields.io/pypi/v/microscopestitching.svg
[pypi]: https://pypi.python.org/pypi/microscopestitching
[wheel]: https://img.shields.io/pypi/wheel/microscopestitching.svg