https://github.com/astrabert/blast-summaraizer
An easy-to-use, intuitive chat interface to ease and speed BLAST results interpretation, starting from 16S rRNA local blasting within the Docker container or from a Description Table (CSV) downloaded from online BLAST results.
https://github.com/astrabert/blast-summaraizer
Last synced: 7 months ago
JSON representation
An easy-to-use, intuitive chat interface to ease and speed BLAST results interpretation, starting from 16S rRNA local blasting within the Docker container or from a Description Table (CSV) downloaded from online BLAST results.
- Host: GitHub
- URL: https://github.com/astrabert/blast-summaraizer
- Owner: AstraBert
- Created: 2024-06-27T01:59:01.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2024-06-28T23:42:14.000Z (over 1 year ago)
- Last Synced: 2025-02-17T04:39:16.281Z (8 months ago)
- Language: Python
- Homepage:
- Size: 5.86 KB
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# BLAST-SummAIrizer
An easy-to-use, intuitive chat interface to ease and speed BLAST results interpretation, starting from 16S rRNA local blasting within the Docker container or from a Description Table (CSV) downloaded from online BLAST results.
## Run locally
1. Pull the Docker image:
```bash
docker pull astrabert/blast-summaraizer:latest
```
2. Run the imagine:
```bash
docker run -p 7860:7860 astrabert/blast-summaraizer:latest
```
3. The app will pop up on `http://localhost:7860` after 30-60 s.
## Use it online
### Hugging Face demo
Use directly the Hugging Face Space demo that you can find [here](https://huggingface.co/spaces/as-cle-bert/BLAST-SummarAIzer)
### Use GitHub CodeSpaces
Click the `Code<>` green button and then click on `CodeSpaces -> Create CodeSpace on 'main'`.
You should be redirected to a VSCode-based space connected to the port on which the app runs, directly accessible under the "Ports" section of the VSCode interface.