https://github.com/astrazeneca/metabolic_classifier
https://github.com/astrazeneca/metabolic_classifier
Last synced: about 2 months ago
JSON representation
- Host: GitHub
- URL: https://github.com/astrazeneca/metabolic_classifier
- Owner: AstraZeneca
- Created: 2024-03-21T12:25:59.000Z (about 2 years ago)
- Default Branch: master
- Last Pushed: 2024-07-30T21:31:00.000Z (almost 2 years ago)
- Last Synced: 2025-12-27T02:52:54.031Z (6 months ago)
- Language: Jupyter Notebook
- Size: 1.86 MB
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 3
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# Metabolic classifier
This repository contains a jupyter notebook containing the calculations described in the paper *Metabolic imaging across scales reveals distinct prostate cancer phenotypes*.
In the notebook we analyse mass spectrometry imaging (MSI) data from a set of prostate cancer (PCa) samples.
We train a small neural network to classify samples as either bengign or malignant. We use Shapley additive explanations to investigate the contributions of each metabolite to a sample's classification as either malignant or bengign.