https://github.com/atrotier/educ_2019_enseirb_skull
https://github.com/atrotier/educ_2019_enseirb_skull
deep-learning enseirb mri post-processing python
Last synced: 3 months ago
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- Host: GitHub
- URL: https://github.com/atrotier/educ_2019_enseirb_skull
- Owner: aTrotier
- Created: 2019-12-14T10:39:56.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2020-02-17T10:18:41.000Z (over 6 years ago)
- Last Synced: 2025-03-06T19:44:27.542Z (over 1 year ago)
- Topics: deep-learning, enseirb, mri, post-processing, python
- Language: Jupyter Notebook
- Homepage:
- Size: 75.7 MB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
## code et informations
#### Data :
https://www.rmsb.u-bordeaux.fr/nextcloud/index.php/s/6oMjTeDtmREpMgC
#### Logiciel de segmentation :
- ITK-snap : http://www.itksnap.org/pmwiki/pmwiki.php
- Slicer : https://www.slicer.org/
- FIJI : https://fiji.sc/
#### Pre/post-processing :
- Slicer : https://www.slicer.org/
- FSL : https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
- ANTS : http://stnava.github.io/ANTs/
- Python :
- NIPY: https://nipy.org/
- N4BiasField https://github.com/bigbigbean/N4BiasFieldCorrection
#### Visualisation :
- Mango : http://ric.uthscsa.edu/mango/
- FSLEYES : https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSLeyes#Install_standalone_build_.28recommended.29
## python module
- NIPY
- nilearn