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https://github.com/audy/genome-explorer

:microscope: Genome Browser for Bacteria
https://github.com/audy/genome-explorer

bioinformatics genomics rails-application

Last synced: about 1 month ago
JSON representation

:microscope: Genome Browser for Bacteria

Host: GitHub
URL: https://github.com/audy/genome-explorer
Owner: audy
License: mit
Created: 2014-09-05T20:41:16.000Z (about 10 years ago)
Default Branch: master
Last Pushed: 2018-04-08T22:00:44.000Z (over 6 years ago)
Last Synced: 2024-09-27T16:03:36.036Z (about 2 months ago)
Topics: bioinformatics, genomics, rails-application
Language: Ruby
Homepage: http://genomes.austinfanclub.com
Size: 3.61 MB
Stars: 4
Watchers: 2
Forks: 1
Open Issues: 5
Metadata Files:
- Readme: readme.md
- License: LICENSE

Awesome Lists containing this project

README

# Genome Explorer

[![Build Status](https://travis-ci.org/audy/genome-explorer.svg)](https://travis-ci.org/audy/genome-explorer)
![Docker Pulls](https://img.shields.io/docker/pulls/audy/genome-explorer.svg)

There are those who wish to view genomes (bo-RING!) and then there are those who
wish to _explore_ them.

## Requirements

- Ruby/Rails
- Postgres
- The desire to explore the world of bacterial genomes
- A computer

## Quickstart

```sh
# with Ruby 2.1.2 and Bundler
bundle install

bundle exec rake db:setup
bundle exec rackup
```

## Deployment

Just docker:

```bash
docker pull audy/genome-explorer
```

Using docker-compose:

```bash
docker-compose up
```

### First time deployment

If this is your first time exploring genomes, you'll need to migrate the
database (after running `docker-compose up`):

```bash
docker-compose run --entrypoint rake web db:migrate
```

### Seeding

Seeding in Docker is not currently supported due to the dependency on non-open
source software (sorry about that). If you send me an email, I will send you a
dump of the production postgres database.

## License

The MIT License (MIT)

See `LICENSE` for details.