https://github.com/avdata99/life.py

Just playing with bioinformatics
https://github.com/avdata99/life.py

Last synced: 24 days ago
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Just playing with bioinformatics

• Host: GitHub
• URL: https://github.com/avdata99/life.py
• Owner: avdata99
• License: gpl-3.0
• Created: 2023-10-03T01:45:08.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2024-04-09T22:03:34.000Z (7 months ago)
• Last Synced: 2024-04-10T04:57:31.711Z (7 months ago)
• Language: Python
• Size: 90.8 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# life.py

Learning Genetics with Python

## Installation

```bash

pip install lifepy

```

## Usage

### Nucleotide

```python

from life import Nucleotide

nuc_a = Nucleotide('A')

nuc_t = Nucleotide('T')

nucs = nuc_a + nuc_t

type(nucs)

print(nucs)

AT

```

### Gene

```python

from life import Gene

sequence = (

    "ggtaagtcctctagtacaaacacccccaatattgtgatataattaaaattatattcatat"

    "tctgttgccagaaaaaacacttttaggctatattagagccatcttctttgaagcgttgtc"

    "ggtaagtgctctagtacaaacacccccaatattgtgatataattaaaattatattcatat"

    "tctgttgccagattttacacttttaggctatattagagccatcttctttgaagcgttgtc"

    "tatgcatcgatcgacgactg"

)

g = Gene(sequence)

g.description = 'Some sample description'

# save will discover your desired format

g.save('test.fasta')

"""

>Some sample description

GGTAAGTCCTCTAGTACAAACACCCCCAATATTGTGATATAATTAAAATTATATTCATATTCTGTTGCCAGAAAAAACAC

TTTTAGGCTATATTAGAGCCATCTTCTTTGAAGCGTTGTCGGTAAGTGCTCTAGTACAAACACCCCCAATATTGTGATAT

AATTAAAATTATATTCATATTCTGTTGCCAGATTTTACACTTTTAGGCTATATTAGAGCCATCTTCTTTGAAGCGTTGTC

TATGCATCGATCGACGACTG

"""

g.save('test.110.fasta', max_line_length=110)

"""

>Some sample description

GGTAAGTCCTCTAGTACAAACACCCCCAATATTGTGATATAATTAAAATTATATTCATATTCTGTTGCCAGAAAAAACACTTTTAGGCTATATTAGAGCCATCTTCTTTG

AAGCGTTGTCGGTAAGTGCTCTAGTACAAACACCCCCAATATTGTGATATAATTAAAATTATATTCATATTCTGTTGCCAGATTTTACACTTTTAGGCTATATTAGAGCC

ATCTTCTTTGAAGCGTTGTCTATGCATCGATCGACGACTG

"""

g.save('test.life')

# Binary custom content

```