https://github.com/averissimo/covid19-analysis

Another analysis of the covid-19 daily data with hospital beds (and nurses) vs. cases
https://github.com/averissimo/covid19-analysis

Last synced: 3 months ago
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Another analysis of the covid-19 daily data with hospital beds (and nurses) vs. cases

• Host: GitHub
• URL: https://github.com/averissimo/covid19-analysis
• Owner: averissimo
• Created: 2020-03-26T15:38:48.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2023-07-06T23:30:42.000Z (almost 3 years ago)
• Last Synced: 2025-04-03T04:15:16.406Z (about 1 year ago)
• Homepage:
• Size: 13.3 MB
• Stars: 1
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
COVID19 Analysis by @averissimo

================

> Exploratory analysis of worldwide COVID-19 cases/deaths.

The full analysis can be found in one of the links below and is updated

as the data is updated.

  - [World](https://averissimo.github.io/covid19-analysis/)

  - [Germany](https://averissimo.github.io/covid19-analysis/germany.html)

    *(by state)*

  - [Italy](https://averissimo.github.io/covid19-analysis/italy.html)

    *(by regione)*

  - [Bavaria](https://averissimo.github.io/covid19-analysis/bayer.html)

    *(Germany)*

Analysis by age group:

  - [Germany](https://averissimo.github.io/covid19.de.data/) *(by

    district)*

### Source code and tecnhology

Source code is available at

[averissimo/r-analysis-covid19](https://github.com/averissimo/r-analysis-covid19).

All the data and analysis was processed in [R programming

language](https://www.r-project.org/).

Data is retrieved from official sources and they are usually updated

once or twice every 24h. The report itself is updated every 15minutes,

even if there are no changes in the data.

#### Data

World data is retrieved from [EU

CDC](https://data.europa.eu/euodp/en/data/dataset/covid-19-coronavirus-data)

and is used as the main data source. When there is a delay on the

release, we alternatively use [John

Hopkin’s](https://github.com/CSSEGISandData/COVID-19/).

Currently, the only exception is for Portugal’s data, which is updated

around noon *(local time)* and we extract that information directly from

the daily situation [PDF

report](https://covid19.min-saude.pt/relatorio-de-situacao/) and store

the updated dataset in a data package

[averissimo/covid19.pt.data](https://github.com/averissimo/covid19.pt.data).

**Notes**

Data is mainly from EU CDC with some updates from Italy, Portugal and

Germany’s institutes responsible with this pandemic.

We also use Eurostat and World Bank for relevant statistics and

populations.

Mapping for Italy codici\_regione taken from

[istat](https://www.istat.it/it/archivio/6789) *(note: two regions are

mapped to same NUTS 2, we chose one – see `download.it.data`)*

Badge showing problems with report generation:

![](https://github.com/averissimo/covid19-analysis/workflows/.github/workflows/main.yml/badge.svg)

## Some Interesting plots

These are included in the full analysis. They are showing data for a

select group of countries.

### Death / Confirmed cases rate

Percentage shows the Death rate per cases. Size of circle represents the

size of the population.

![](https://averissimo.github.io/covid19-analysis/index_files/figure-html/main_plots_death_cases-1.svg)

### Rolling average of past 4 days

Each data point is an average of the previous 4 days

![](https://averissimo.github.io/covid19-analysis/index_files/figure-html/main_plots_last_week_cumulative_confirmed-1.svg)

### Rolling average of deaths *(per 100k population)*

Each data point is an average of the previous 4 days

![](https://averissimo.github.io/covid19-analysis/index_files/figure-html/main_plots_last_week_cumulative_deaths-1.svg)