https://github.com/avikdatta/python_scripts

https://github.com/avikdatta/python_scripts

ehive flask-api ftp pandas python-3 python-script restful-api

Last synced: about 1 month ago
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• Host: GitHub
• URL: https://github.com/avikdatta/python_scripts
• Owner: avikdatta
• License: apache-2.0
• Created: 2016-08-20T10:40:05.000Z (almost 10 years ago)
• Default Branch: master
• Last Pushed: 2017-08-04T14:09:11.000Z (almost 9 years ago)
• Last Synced: 2025-05-06T16:57:28.480Z (about 1 year ago)
• Topics: ehive, flask-api, ftp, pandas, python-3, python-script, restful-api
• Language: Python
• Size: 657 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# Python scripts [![Documentation Status](https://readthedocs.org/projects/python-scripts/badge/?version=latest)](http://python-scripts.readthedocs.io/en/latest/?badge=latest)

This is a repository for python scripts

## List of scripts

* [Load FTP File information in Database](scripts/load_ftp_files).

* [JSON trackhub](scripts/index_to_json_hub).

* JSON report for data release using [script](scripts/prepare_report/index_report/json_report) and [REST api](scripts/prepare_report/index_report/json_report_rest).

* Bed files stats using [script](scripts/prepare_report/bed_files_count_report/bed_report_script) and [REST api](scripts/prepare_report/bed_files_count_report/bed_report_rest_api).

* A [script](scripts/prepare_dataframe) for generation of the ChIP-Seq peak count dataframe.

* A [REST Api](scripts/plot_data/plot_bed_peak_for_group/) for generating ChIP-Seq peak count boxplot.

* A [script](scripts/load_ftp_bed_files_in_db) for downloading all ChIP-Seq peak call bed files from FTP site.

* An [eHive pipeline](/lib/Hive/PipeConfig/Get_FTP_bed_files) for downloading ChIP-Seq peak call bed files from FTP