https://github.com/avivace/dna-recombination

Computer Science B.Sc thesis paper and final stage experience. Approaching a Computational Biology Problem with integer linear programming tools.
https://github.com/avivace/dna-recombination

bachelor-project bachelor-thesis bioinformatics ciliate-species computational-biology dna-assembly dna-rearrangement dna-recombination gurobi integer-linear-programming linear-programming thesis thesis-paper

Last synced: about 2 months ago
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Computer Science B.Sc thesis paper and final stage experience. Approaching a Computational Biology Problem with integer linear programming tools.

• Host: GitHub
• URL: https://github.com/avivace/dna-recombination
• Owner: avivace
• License: gpl-3.0
• Created: 2017-07-28T09:52:08.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2020-09-26T13:54:43.000Z (over 4 years ago)
• Last Synced: 2025-02-08T07:12:16.843Z (3 months ago)
• Topics: bachelor-project, bachelor-thesis, bioinformatics, ciliate-species, computational-biology, dna-assembly, dna-rearrangement, dna-recombination, gurobi, integer-linear-programming, linear-programming, thesis, thesis-paper
• Language: TeX
• Homepage:
• Size: 8.07 MB
• Stars: 3
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
## Integer Linear Programming approaches on the DNA Recombination problem in ciliates

Antonio Vivace, 2017, Computational Molecular Biology



Advisor: Gianluca Della Vedova (Università Milano-Bicocca)

### [Thesis (PDF)](https://github.com/avivace/dna-recombination/raw/master/thesis/thesis.pdf)

This repository covers everything related to my [Computer Science BSc](https://github.com/avivace/compsci) thesis and final Stage experience.

## Contents

- `script/`

- `thesis/`

- `timeline.md`

- `problem/`