https://github.com/b-cubed-eu/dubicube

An R package to explore calculation, interpretation and visualisation of uncertainty related to indicators based on biodiversity data cubes.
https://github.com/b-cubed-eu/dubicube

biodiversity-indicators data-cubes r rpackage uncertainty-quantification uncertainty-visualisation

Last synced: about 1 year ago
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An R package to explore calculation, interpretation and visualisation of uncertainty related to indicators based on biodiversity data cubes.

• Host: GitHub
• URL: https://github.com/b-cubed-eu/dubicube
• Owner: b-cubed-eu
• License: other
• Created: 2024-11-07T14:51:25.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2025-03-09T17:54:26.000Z (over 1 year ago)
• Last Synced: 2025-03-09T18:31:55.598Z (over 1 year ago)
• Topics: biodiversity-indicators, data-cubes, r, rpackage, uncertainty-quantification, uncertainty-visualisation
• Language: R
• Homepage: https://b-cubed-eu.github.io/dubicube/
• Size: 1.87 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 4
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS.md
  • Contributing: .github/CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: .github/CODE_OF_CONDUCT.md
  • Citation: CITATION.cff
  • Codemeta: codemeta.json

Awesome Lists containing this project

README

          
---

output: github_document

editor_options: 

  chunk_output_type: console

---

```{r, include = FALSE}

knitr::opts_chunk$set(

  collapse = TRUE,

  comment = "#>",

  fig.path = file.path("man", "figures", "readme-"),

  out.width = "80%",

  dpi = 300

)

```

# dubicube 

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[![dubicube status badge](https://b-cubed-eu.r-universe.dev/dubicube/badges/version)](https://b-cubed-eu.r-universe.dev/dubicube)

[![CRAN status](https://www.r-pkg.org/badges/version/dubicube)](https://CRAN.R-project.org/package=dubicube)

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[![codecov](https://codecov.io/gh/b-cubed-eu/dubicube/branch/main/graph/badge.svg)](https://app.codecov.io/gh/b-cubed-eu/dubicube/)

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.14850237.svg)](https://doi.org/10.5281/zenodo.14850237)

[![name status badge](https://b-cubed-eu.r-universe.dev/badges/:name?color=6CDDB4)](https://b-cubed-eu.r-universe.dev/)

The **dubicube** package aims to deliver measures for assessing the applicability of biodiversity data cubes, whether for general use or specific biodiversity indicators. These measures facilitate data exploration by providing insights into data quality and reliability. Additionally, the package includes functions for calculating indicator uncertainty using bootstrapping, as well as tools for interpreting and visualising uncertainty in biodiversity indicators derived from occurrence cubes. 

## Installation

Install **dubicube** in R:

```r

install.packages("dubicube", repos = "https://b-cubed-eu.r-universe.dev")

```

You can install the development version from [GitHub](https://github.com/) with:

``` r

# install.packages("remotes")

remotes::install_github("b-cubed-eu/dubicube")

```

## Example

Basic example coming soon.