https://github.com/baderlab/ccinx

Build predicted cell-cell interaction networks from single-cell data.
https://github.com/baderlab/ccinx

Last synced: about 5 hours ago
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Build predicted cell-cell interaction networks from single-cell data.

• Host: GitHub
• URL: https://github.com/baderlab/ccinx
• Owner: BaderLab
• License: mit
• Created: 2019-02-26T14:05:09.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2023-01-31T14:47:35.000Z (almost 2 years ago)
• Last Synced: 2024-11-05T10:26:22.147Z (about 2 months ago)
• Language: HTML
• Homepage: https://baderlab.github.io/CCInx/
• Size: 14.3 MB
• Stars: 9
• Watchers: 13
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# CCInx

Build predicted cell-cell interaction networks from single-cell data.

Uses the [Bader lab ligand-receptor database](http://baderlab.org/CellCellInteractions) (DOI:[10.5281/zenodo.7589953](https://doi.org/10.5281/zenodo.7589953)) generated by Ruth Isserlin.

## Installation

```r

devtools::install_github("BaderLab/CCInx")

```

This package is under development, so keep up-to-date by regularly checking for updates using 

```r

devtools::update_packages()

```

## Usage

See [vignette](vignettes/CCInxUsage.html) for usage.