https://github.com/baderlab/ccinx
Build predicted cell-cell interaction networks from single-cell data.
https://github.com/baderlab/ccinx
Last synced: 4 months ago
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Build predicted cell-cell interaction networks from single-cell data.
- Host: GitHub
- URL: https://github.com/baderlab/ccinx
- Owner: BaderLab
- License: mit
- Created: 2019-02-26T14:05:09.000Z (over 7 years ago)
- Default Branch: master
- Last Pushed: 2023-01-31T14:47:35.000Z (over 3 years ago)
- Last Synced: 2025-04-08T22:32:05.812Z (about 1 year ago)
- Language: HTML
- Homepage: https://baderlab.github.io/CCInx/
- Size: 14.3 MB
- Stars: 9
- Watchers: 12
- Forks: 3
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# CCInx
Build predicted cell-cell interaction networks from single-cell data.
Uses the [Bader lab ligand-receptor database](http://baderlab.org/CellCellInteractions) (DOI:[10.5281/zenodo.7589953](https://doi.org/10.5281/zenodo.7589953)) generated by Ruth Isserlin.
## Installation
```r
devtools::install_github("BaderLab/CCInx")
```
This package is under development, so keep up-to-date by regularly checking for updates using
```r
devtools::update_packages()
```
## Usage
See [vignette](vignettes/CCInxUsage.html) for usage.