https://github.com/bambinos/formulae

Formulas for mixed-effects models in Python
https://github.com/bambinos/formulae

bambi mixed-models python wilkinson-formulas

Last synced: 5 days ago
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Formulas for mixed-effects models in Python

• Host: GitHub
• URL: https://github.com/bambinos/formulae
• Owner: bambinos
• License: mit
• Created: 2020-12-18T02:24:59.000Z (almost 4 years ago)
• Default Branch: master
• Last Pushed: 2024-09-22T21:50:00.000Z (about 2 months ago)
• Last Synced: 2024-10-29T01:24:48.185Z (23 days ago)
• Topics: bambi, mixed-models, python, wilkinson-formulas
• Language: Python
• Homepage: https://bambinos.github.io/formulae/
• Size: 6.49 MB
• Stars: 56
• Watchers: 5
• Forks: 14
• Open Issues: 13
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE

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# formulae

formulae is a Python library that implements Wilkinson's formulas for mixed-effects models. The main difference with other implementations like [Patsy](https://github.com/pydata/patsy) or [formulaic](https://github.com/matthewwardrop/formulaic) is that formulae can work with formulas describing a model with both common and group specific effects (a.k.a. fixed and random effects, respectively).

This package has been written to make it easier to specify models with group effects in [Bambi](https://github.com/bambinos/bambi), a package that makes it easy to work with Bayesian GLMMs in Python, but it could be used independently as a backend for another library. The approach in this library is to extend classical statistical formulas in a similar way than in R package [lme4](https://CRAN.R-project.org/package=lme4).

## Installation

formulae requires a working Python interpreter (3.7+) and the libraries numpy, scipy and pandas with versions specified in the [requirements.txt](https://github.com/bambinos/formulae/blob/master/requirements.txt) file.

Assuming a standard Python environment is installed on your machine (including pip), the latest release of formulae can be installed in one line using pip:

`pip install formulae`

Alternatively, if you want the development version of the package you can install from GitHub:

`pip install git+https://github.com/bambinos/formulae.git`

## Documentation

The official documentation can be found [here](https://bambinos.github.io/formulae)

## Notes

- The `data` argument only accepts objects of class `pandas.DataFrame`.

- `y ~ .` is not implemented and won't be implemented in a first version. However, it is planned to be included in the future.