https://github.com/barricklab/brefito

Snakemake pipelines for analyzing resequenced bacterial genomes
https://github.com/barricklab/brefito

Last synced: 4 months ago
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Snakemake pipelines for analyzing resequenced bacterial genomes

• Host: GitHub
• URL: https://github.com/barricklab/brefito
• Owner: barricklab
• License: mit
• Created: 2023-06-21T12:41:12.000Z (about 3 years ago)
• Default Branch: main
• Last Pushed: 2026-04-02T10:50:55.000Z (4 months ago)
• Last Synced: 2026-04-03T00:59:37.972Z (4 months ago)
• Language: Python
• Homepage:
• Size: 1.68 MB
• Stars: 3
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# brefito

_brefito_ is a helper script and set of snakemake pipelines for assembling, polishing, checking, and annotating microbial reference sequences and for predicting mutations in a microbial genome from re-sequencing data.

Documentation is on the GitHub Wiki:

* [Home](https://github.com/barricklab/brefito/wiki/Home)

* [Installation](https://github.com/barricklab/brefito/wiki/Installation)

* [Overview](https://github.com/barricklab/brefito/wiki/Overview)

* [Workflows](https://github.com/barricklab/brefito/wiki/Workflows)