https://github.com/batoolmm/deepsulfation

It uses deep learning to predict sulfation sites from protein sequence.
https://github.com/batoolmm/deepsulfation

Last synced: 6 months ago
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It uses deep learning to predict sulfation sites from protein sequence.

• Host: GitHub
• URL: https://github.com/batoolmm/deepsulfation
• Owner: BatoolMM
• License: mit
• Created: 2020-09-10T15:03:16.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2020-10-18T15:51:59.000Z (over 5 years ago)
• Last Synced: 2025-05-21T11:51:33.778Z (9 months ago)
• Language: Jupyter Notebook
• Homepage:
• Size: 94.7 KB
• Stars: 5
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# DeepSulfation (in progress)

1- Collection of all the verified sulfation sites of human proteins from UniProt, and then pre-process them by removing redundancy. 

3 - Attempting to represent protein sequences as continuous vectors (embeddings) by using the language model ELMo taken from natural language processing.

4 - Evaluate the predication performance and compare it to the other known methods.

5 - Deploying the model in the web using Streamlit and AWS.