https://github.com/batoolmm/exonr
R package for generating beautiful and customizable plots for the exons and introns of any gene
https://github.com/batoolmm/exonr
Last synced: 5 months ago
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R package for generating beautiful and customizable plots for the exons and introns of any gene
- Host: GitHub
- URL: https://github.com/batoolmm/exonr
- Owner: BatoolMM
- License: other
- Created: 2020-11-29T21:29:08.000Z (about 5 years ago)
- Default Branch: main
- Last Pushed: 2021-07-26T20:50:20.000Z (over 4 years ago)
- Last Synced: 2025-04-11T00:55:17.532Z (10 months ago)
- Language: R
- Homepage:
- Size: 486 KB
- Stars: 12
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# exonR
[](https://fair-software.eu)
exonR is an R package for generating beautiful and customizable plots for the exons and introns of any gene.
If you find any bugs, have any feature requests or feedback, please submit an issue.
To download and install the development version of the package, use `devtools`:
```
install.packages("devtools")
devtools::install_github("BatoolMM/exonR")
```
Once you've installed the package, you can load the library in the standard way:
```
library(exonR)
```
**Basic usage:**
```
BRCA2 <- find_exons("NM_000059")
BRCA2
chromosome/scaffold_name exon_region_start__bp_ exon_region_end__bp_
1 13 32890559 32890664
2 13 32893214 32893462
3 13 32899213 32899321
5'_utr_start 5'_utr_end 3'_utr_start 3'_utr_end exon_length
1 32890559 32890597 NA NA 105
2 NA NA NA NA 248
3 NA NA NA NA 108
graph <- plot_exons(BRCA2, BRCA2$exon_region_start__bp_, BRCA2$exon_region_end__bp_)
```
### TODO:
- FAIRfication of the package