https://github.com/bayer-group/genie-parser
Python package for processing AACR GENIE data
https://github.com/bayer-group/genie-parser
bayer-reg-none beat-not-applicable open-source
Last synced: 3 months ago
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Python package for processing AACR GENIE data
- Host: GitHub
- URL: https://github.com/bayer-group/genie-parser
- Owner: Bayer-Group
- License: bsd-3-clause
- Created: 2024-05-24T12:54:17.000Z (about 1 year ago)
- Default Branch: main
- Last Pushed: 2024-06-01T12:26:28.000Z (about 1 year ago)
- Last Synced: 2025-01-20T15:47:26.427Z (5 months ago)
- Topics: bayer-reg-none, beat-not-applicable, open-source
- Language: Jupyter Notebook
- Homepage: https://bayer-group.github.io/genie-parser/
- Size: 9.08 MB
- Stars: 0
- Watchers: 0
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Codeowners: CODEOWNERS
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README
# Python module `genie`
This Python module is for working with data from the AACR genie project. Please
see the docmentation at https://Bayer-Group.github.io/genie-parser/ for details.
!!! warning
If you want to contribute to this project by pushing any commits, please copy
the git hooks to `.git/hooks`. This is not automatically done by a `git
clone`. See the README in the `git-hooks` directory.
## Installation of the genie package
It is recommended to create a new virtual environment with Python >= 3.9 and to
install the genie package in that environment. Activate the environment and run:
```sh
pip install "git+https://github.com/Bayer-Group/genie-parser.git"
```
If you want to install a particular develpment branch, use
```sh
pip install "git+https://github.com/Bayer-Group/genie-parser.git@BRANCHNAME"
```