https://github.com/bblodfon/usefun

Various useful R functions
https://github.com/bblodfon/usefun

functions r r-package

Last synced: 12 months ago
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Various useful R functions

• Host: GitHub
• URL: https://github.com/bblodfon/usefun
• Owner: bblodfon
• License: other
• Created: 2019-06-11T09:31:32.000Z (about 7 years ago)
• Default Branch: main
• Last Pushed: 2024-09-14T23:30:02.000Z (almost 2 years ago)
• Last Synced: 2025-06-26T03:05:27.061Z (about 1 year ago)
• Topics: functions, r, r-package
• Language: R
• Homepage:
• Size: 171 KB
• Stars: 4
• Watchers: 1
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md
  • License: LICENSE

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README

          
# usefun

[![R build status](https://github.com/bblodfon/usefun/workflows/R-CMD-check/badge.svg)](https://github.com/bblodfon/usefun/actions)

[![codecov](https://codecov.io/gh/bblodfon/usefun/branch/main/graph/badge.svg)](https://app.codecov.io/gh/bblodfon/usefun)

[![CRAN status](https://www.r-pkg.org/badges/version/usefun)](https://cran.r-project.org/package=usefun)

[![Downloads](https://cranlogs.r-pkg.org/badges/usefun)](https://cran.r-project.org/package=usefun)

A set of miscellaneous functions that I have used in various projects and in other R packages. 

Some of the most important are:

- `powerset_icounts()`: find common (patient) ids in incomplete multi-omic datasets

- `get_roc_stats()`: the ROC statistics the way you want it!

- `pr.test()`: compare two PR curves (AUCs) and get a p-value!

- `pr.boot()`: bootstrap CIs for PR curve

- `partial_permut()`: get a partially-scrambled vector (you choose how much!)

- `normalize_to_range()`: normalize a vector to a specified range

- `dec_to_bin()`: convert a decimal (base-10) number to its binary representation

- `get_percentage_of_matches()`: find the percentage of common elements between two vectors

- `outersect()`: find the non-common elements between two vectors (outer-section!)

- `colors.100`: a vector of 100 as much as possible *distinct* colors

## Install

CRAN version:

```

install.packages("usefun")

```

Development version:

```

devtools::install_github("bblodfon/usefun")

```

## Examples

See examples in the functions documentation and in the respective tests.

For a full biomarker analysis that uses various functions from this package, see [this report](https://druglogics.github.io/gitsbe-model-analysis/atopo/cell-lines-2500/).