https://github.com/bbuchfink/deepclust-data

https://github.com/bbuchfink/deepclust-data

Last synced: 5 months ago
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• Host: GitHub
• URL: https://github.com/bbuchfink/deepclust-data
• Owner: bbuchfink
• License: gpl-3.0
• Created: 2023-12-13T14:04:42.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2025-06-18T11:04:57.000Z (12 months ago)
• Last Synced: 2025-06-18T11:27:24.753Z (12 months ago)
• Language: Shell
• Size: 17.8 MB
• Stars: 0
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
Scripts to reproduce the results of Buchfink et al., "Sensitive clustering of protein sequences at tree-of-life scale using DIAMOND DeepClust".

# Data files

Data files that are required (see Data availability):

- `arch80_all.tsv`: File mapping NCBI accessions to Pfam domain architectures.

- `nr_accessions.tsv.zst`: List of all accessions in NR database that was used for the main benchmark.

- `clan2acc.tsv`: File mapping Pfam accessions to clans.

- `clust.dedup2.tsv.zst`: TSV file mapping cluster member sequences to representatives for the big ~19bn clustering run.

- `centroids.dedup.faa`: FASTA file of representatives for the big ~19bn clustering run.