https://github.com/bcbi/solrplantapi
Identification and resolution of plant taxonomic names
https://github.com/bcbi/solrplantapi
Last synced: 4 months ago
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Identification and resolution of plant taxonomic names
- Host: GitHub
- URL: https://github.com/bcbi/solrplantapi
- Owner: bcbi
- License: mit
- Created: 2018-04-16T18:02:10.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2020-02-08T17:07:26.000Z (over 6 years ago)
- Last Synced: 2025-03-27T23:23:31.853Z (over 1 year ago)
- Language: Julia
- Homepage: https://bcbi.brown.edu
- Size: 55.7 KB
- Stars: 4
- Watchers: 6
- Forks: 0
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# SolrPlantAPI
Web-accessible (REST) service for Identification and resolution of plant taxonomic names
## Prerequisites
* Julia 1.0
* Python
* NLTK `pip install nltk`
* NLTK resources
```
import nltk
nltk.download('punkt')
nltk.download('conll2000')
```
* TEXTBLOB `pip install blob`
### Installing/Running locally
* Clone this repository
* Install Julia dependencies (within Julia REPL)
```
julia install_julia_pkgs
```
* Run `julia chemgrab_api.jl`
### Sample queries to BCBI's server
* `http://bcbi.brown.edu/solrplant_api/?plantname=Arabidopsis%20thaliana`
### WebAccess
You may also access this tool though our [website](http://bcbi.brown.edu/solrplant)