https://github.com/bcgsc/RNA-Bloom

:hibiscus: reference-free transcriptome assembly for short and long reads
https://github.com/bcgsc/RNA-Bloom

bioinformatics-tool bulk-rna-seq denovo-assembly nanopore-sequencing pacbio-sequencing rna-seq single-cell-rna-seq

Last synced: 3 months ago
JSON representation

:hibiscus: reference-free transcriptome assembly for short and long reads

• Host: GitHub
• URL: https://github.com/bcgsc/RNA-Bloom
• Owner: bcgsc
• License: other
• Created: 2018-06-30T22:24:19.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2024-01-28T00:07:05.000Z (10 months ago)
• Last Synced: 2024-05-14T00:23:51.388Z (6 months ago)
• Topics: bioinformatics-tool, bulk-rna-seq, denovo-assembly, nanopore-sequencing, pacbio-sequencing, rna-seq, single-cell-rna-seq
• Language: Java
• Homepage:
• Size: 2.41 MB
• Stars: 82
• Watchers: 11
• Forks: 7
• Open Issues: 15
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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• awesome-nanopore - RNAbloom2 - [Java] - [Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2](https://www.nature.com/articles/s41467-023-38553-y) (Software packages / Transcript discovery and quantification)