https://github.com/bdpedigo/skedits-app

Tools for orchestrating skeleton analysis in cloud infrastructure
https://github.com/bdpedigo/skedits-app

Last synced: 7 days ago
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Tools for orchestrating skeleton analysis in cloud infrastructure

• Host: GitHub
• URL: https://github.com/bdpedigo/skedits-app
• Owner: bdpedigo
• Created: 2023-11-08T22:10:05.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2024-02-16T23:10:23.000Z (9 months ago)
• Last Synced: 2024-02-17T00:24:05.329Z (9 months ago)
• Language: Shell
• Size: 17.6 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# skedits-app

Recipe for running some skeleton edits analysis in the cloud

## Building/running (on Apple Silicon)

I was having issues with `pip` not finding the right wheels I think since my computer is

ARM architecture - to fix, when building I needed to do:

``docker buildx build --platform linux/amd64 -t skedits-app .``

And when running:

``docker run --rm --platform linux/amd64 -v /Users/ben.pedigo/.cloudvolume/secrets:/root/.cloudvolume/secrets skedits-app``

There's also:

``docker compose up``

## Publish

To tag:

``docker tag skedits-app bdpedigo/skedits-app:v``

To push

``docker push bdpedigo/skedits-app:v``

## If running out of space

``docker system prune -a``

## Making a cluster

 

``sh ./make_cluster.sh``

## Configuring a cluster 

``kubectl apply -f kube-task.yml``

## Monitor the cluster

``kubectl get pods``

## Watch the logs in real-time 

``kubectl logs -f ``