https://github.com/becavin-lab/cellranger-to-scanpy

A small python script to import cellranger analysis into Scapy. It loads scRNA-Seq experiment out of cellranger, includes the count matrices, the UMAP+T-SNE reduction, the clustering, and normalized RNA count matrix.
https://github.com/becavin-lab/cellranger-to-scanpy

Last synced: about 2 months ago
JSON representation

A small python script to import cellranger analysis into Scapy. It loads scRNA-Seq experiment out of cellranger, includes the count matrices, the UMAP+T-SNE reduction, the clustering, and normalized RNA count matrix.

• Host: GitHub
• URL: https://github.com/becavin-lab/cellranger-to-scanpy
• Owner: becavin-lab
• License: mit
• Created: 2022-07-27T09:06:12.000Z (almost 4 years ago)
• Default Branch: main
• Last Pushed: 2022-07-27T14:50:44.000Z (almost 4 years ago)
• Last Synced: 2025-09-09T14:32:18.318Z (9 months ago)
• Language: Python
• Size: 4.88 KB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

          
# cellranger-to-scanpy

A small python script to import cellranger analysis into Scanpy. It loads scRNA-Seq experiment out of cellranger, includes the count matrices, the UMAP+T-SNE reduction, the clustering, and normalized RNA count matrix.