https://github.com/becavin-lab/cellranger-to-seurat

A small R script to import cellranger analysis into Seurat. It includes the count matrices, the UMAP+T-SNE reduction, and the clustering
https://github.com/becavin-lab/cellranger-to-seurat

Last synced: 4 months ago
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A small R script to import cellranger analysis into Seurat. It includes the count matrices, the UMAP+T-SNE reduction, and the clustering

• Host: GitHub
• URL: https://github.com/becavin-lab/cellranger-to-seurat
• Owner: becavin-lab
• License: mit
• Created: 2021-06-17T11:37:06.000Z (about 5 years ago)
• Default Branch: main
• Last Pushed: 2021-06-17T13:33:42.000Z (about 5 years ago)
• Last Synced: 2025-09-09T14:32:15.103Z (11 months ago)
• Language: R
• Size: 2.93 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# 10x-to-seurat

A small R script to import cellranger analysis into Seurat. It loads multiome experiment out of cellranger, includes the count matrices, the UMAP+T-SNE reduction, the clustering, and normalize GEX and ATAC count matrix.