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https://github.com/benedekrozemberczki/walklets
A lightweight implementation of Walklets from "Don't Walk Skip! Online Learning of Multi-scale Network Embeddings" (ASONAM 2017).
https://github.com/benedekrozemberczki/walklets
deep-learning deepwalk dimensionality-reduction dont-walk-skip edge-prediction embedding gensim graph-convolution graph-embedding graph-mining graph-neural-networks graphlet machine-learning multiscale node-classification node-embedding node2vec walklet word-embedding word2vec
Last synced: about 2 months ago
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A lightweight implementation of Walklets from "Don't Walk Skip! Online Learning of Multi-scale Network Embeddings" (ASONAM 2017).
- Host: GitHub
- URL: https://github.com/benedekrozemberczki/walklets
- Owner: benedekrozemberczki
- License: gpl-3.0
- Created: 2018-08-09T15:37:24.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2023-03-18T12:12:34.000Z (over 1 year ago)
- Last Synced: 2024-05-21T17:22:54.492Z (4 months ago)
- Topics: deep-learning, deepwalk, dimensionality-reduction, dont-walk-skip, edge-prediction, embedding, gensim, graph-convolution, graph-embedding, graph-mining, graph-neural-networks, graphlet, machine-learning, multiscale, node-classification, node-embedding, node2vec, walklet, word-embedding, word2vec
- Language: Python
- Homepage: https://karateclub.readthedocs.io/
- Size: 2.99 MB
- Stars: 101
- Watchers: 9
- Forks: 22
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Funding: .github/FUNDING.yml
- License: LICENSE
Awesome Lists containing this project
- awesome-network-embedding - [Python
README
Walklets
================
[](https://arxiv.org/abs/1605.02115) [](https://codebeat.co/projects/github-com-benedekrozemberczki-walklets-master) [](https://github.com/benedekrozemberczki/walklets/archive/master.zip) [](https://twitter.com/intent/follow?screen_name=benrozemberczki)
### Abstract
We present Walklets, a novel approach for learning multiscale representations of vertices in a network. In contrast to previous works, these representations explicitly encode multiscale vertex relationships in a way that is analytically derivable. Walklets generates these multiscale relationships by subsampling short random walks on the vertices of a graph. By `skipping' over steps in each random walk, our method generates a corpus of vertex pairs which are reachable via paths of a fixed length. This corpus can then be used to learn a series of latent representations, each of which captures successively higher order relationships from the adjacency matrix. We demonstrate the efficacy of Walklets's latent representations on several multi-label network classification tasks for social networks such as BlogCatalog, DBLP, Flickr, and YouTube. Our results show that Walklets outperforms new methods based on neural matrix factorization. Specifically, we outperform DeepWalk by up to 10% and LINE by 58% Micro-F1 on challenging multi-label classification tasks. Finally, Walklets is an online algorithm, and can easily scale to graphs with millions of vertices and edges.
The implementation supports second-order random walk sampling, which was proposed in the original paper but was not implemented in it. The second-order random walks sampling methods were taken from the reference implementation of [Node2vec](https://github.com/aditya-grover/node2vec).
This repository provides an implementation of **Walklets** as described in the paper:
> Don't Walk, Skip! Online Learning of Multi-scale Network Embeddings.
> Bryan Perozzi, Vivek Kulkarni, Haochen Chen, Steven Skiena.
> ASONAM, 2017.
> https://arxiv.org/abs/1605.02115
--------------------------------------
The model is now also available in the package [Karate Club](https://github.com/benedekrozemberczki/karateclub).
A C++ implementation of Walklets is available [[here]](https://github.com/cnclabs/smore).
### Requirements
The codebase is implemented in Python 3.5.2 | Anaconda 4.2.0 (64-bit). Package versions used for development are just below.
```
tqdm 4.28.1
numpy 1.15.4
pandas 0.23.4
texttable 1.5.0
gensim 3.6.0
networkx 2.4
```
### Datasets
The code takes an input graph in a csv file. Every row indicates an edge between two nodes separated by a comma. The first row is a header. Nodes should be indexed starting with 0. Sample graphs for the `Facebook Politicians` and `Facebook Food` datasets are included in the `input/` directory.
### Options
Learning of the embedding is handled by the `src/embedding_clustering.py` script which provides the following command line arguments.
#### Input and output options
```
--input STR Input graph path. Default is `input/food_edges.csv`.
--output STR Embeddings path. Default is `output/food_embedding.csv`.
```
#### Model options
```
--dimensions INT Number of dimensions. Default is 16.
--walk-length INT Length of random walk per source. Default is 80.
--walk-number INT Number of random walks per source. Default is 5.
--window-size INT Window size for proximity statistic extraction. Default is 5.
--min-count INT Minimal number of appeareances is to be kept. Default is 1.
--workers INT Number of cores used for optimization. Default is 4.
--walk-type STR Order of random walk. Default is `first`.
--P FLOAT Return hyperparameter for second-order walk. Default is 1.0.
--Q FLOAT In-out hyperparameter for second-order walk. Default is 1.0.
```
### Examples
The following commands learn a graph embedding and writes these to disk. The node representations are ordered by the ID.
Creating a Walklet embedding of the default dataset with the default hyperparameter settings. Saving the embedding, cluster centres and the log file at the default path.
```sh
$ python src/main.py
```
Creating an embedding of an other dataset the `Facebook Politicians`. Saving the output and the log in a custom place.
```sh
$ python src/main.py --input input/politicians_edges.csv --output output/politician_embedding.csv
```
Creating an embedding of the default dataset in 32 dimensions, 20 sequences per source node with length 160.
```sh
$ python src/main.py --dimensions 32 --walk-number 20 --walk-length 160
```
Creating an embedding of the default dataset in 32 dimensions, 20 sequences per source node with length 160. We use second-order random walk sampling with a custom random walk behaviour setting.
```sh
$ python src/main.py --dimensions 32 --walk-number 20 --walk-length 160 --walk-type second --P 4 --Q 0.25
```
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**License**
- [GNU](https://github.com/benedekrozemberczki/Walklets/blob/master/LICENSE)
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