https://github.com/benedictpaten/sonLib

Small general purpose library for C and Python with focus on bioinformatics.
https://github.com/benedictpaten/sonLib

Last synced: 18 days ago
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Small general purpose library for C and Python with focus on bioinformatics.

• Host: GitHub
• URL: https://github.com/benedictpaten/sonLib
• Owner: benedictpaten
• License: mit
• Created: 2011-02-01T20:11:25.000Z (almost 14 years ago)
• Default Branch: master
• Last Pushed: 2022-09-15T02:24:18.000Z (about 2 years ago)
• Last Synced: 2024-09-17T07:51:15.474Z (about 2 months ago)
• Language: C
• Homepage:
• Size: 1.55 MB
• Stars: 29
• Watchers: 10
• Forks: 25
• Open Issues: 21
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

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README

        
# sonLib

**sonLib** is a compact C/Python library for sequence analysis in bioinformatics. 

(c) 2006 - 2012 The Author(s). See LICENSE.txt for details.

## Author

[Benedict Paten](https://github.com/benedictpaten/)

## Description

For basic data-structures in C it contains: 

 * array lists (automatically resizing) 

 * hashes

 * sets (backed by hashes)

 * sorted sets (backed by an AVL tree)

 * containers (for putting primitives into the above data-structures)

 * better string functions

 * simple exception mechanism

 * logging functions 

For bioinformatic data-structures it contains (or will contain):

 * Fasta I/O functions

 * MAF I/O functions

 * Newick tree I/O functions

For more details see the Full README in doc/README