https://github.com/benhg/get-genbank

Download all of Genbank database from ftp://ncbi.nlm.nih.gov/genbank/
https://github.com/benhg/get-genbank

Last synced: 19 days ago
JSON representation

Download all of Genbank database from ftp://ncbi.nlm.nih.gov/genbank/

• Host: GitHub
• URL: https://github.com/benhg/get-genbank
• Owner: benhg
• Created: 2018-03-13T22:21:52.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2018-03-13T23:59:56.000Z (almost 7 years ago)
• Last Synced: 2024-11-01T22:43:39.634Z (2 months ago)
• Language: Perl
• Size: 10.7 KB
• Stars: 3
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
usage: `python3 get_genbank.py`

result: creates directories with all available genbank databases. Currently, this would look like this:

 

```

               |gbvrl

               |gbsyn

               |gbsts

               |gbrod

               |gbpri

               |gbbct

               |gbcon

               |gbenv

-/gbest  

 	      \gbgss

               |gbhtc

               |gbhtg

               |gbinv

	       |gbmam

	       |gbpat

               |gbphg

               |gbtsa

               |gbuna

               |gbvrt

``` 

Please note that there is roughly 906 GB of data downloaded with this script. Be careful.