https://github.com/benjaminrich/table1
https://github.com/benjaminrich/table1
Last synced: about 1 month ago
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- Host: GitHub
- URL: https://github.com/benjaminrich/table1
- Owner: benjaminrich
- Created: 2017-01-24T21:35:51.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2025-04-24T20:50:50.000Z (about 2 months ago)
- Last Synced: 2025-04-24T21:42:41.057Z (about 2 months ago)
- Language: HTML
- Size: 1.89 MB
- Stars: 83
- Watchers: 5
- Forks: 27
- Open Issues: 27
-
Metadata Files:
- Readme: README.md
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README
# table1
[](https://github.com/benjaminrich/table1/actions)
[](https://CRAN.R-project.org/package=table1)
[](https://CRAN.R-project.org/package=table1)
An R package for generating tables of descriptive statistics in HTML.
## Installation
To install from CRAN:
``` r
install.packages("table1")
```
To install the latest development version directly from GitHub:
``` r
require(devtools)
devtools::install_github("benjaminrich/table1")
```
## Getting Started
An introduction to the package with examples is provided in the [vignette](https://benjaminrich.github.io/table1/vignettes/table1-examples.html).
## Example
For this example, we will use data from the Mayo Clinic trial in primary biliary cirrhosis (PBC) of the liver found in the `survival` package.
``` r
require(table1)
require(survival)
dat <- subset(survival::pbc, !is.na(trt)) # Exclude subjects not randomized
dat$trt <- factor(dat$trt, levels=1:2, labels=c("D-penicillamine", "Placebo"))
dat$sex <- factor(dat$sex, levels=c("m", "f"), labels=c("Male", "Female"))
dat$stage <- factor(dat$stage, levels=1:4, labels=paste("Stage", 1:4))
dat$edema <- factor(dat$edema, levels=c(0, 0.5, 1),
labels=c("No edema",
"Untreated or successfully treated",
"Edema despite diuretic therapy"))
dat$spiders <- as.logical(dat$spiders)
dat$hepato <- as.logical(dat$hepato)
dat$ascites <- as.logical(dat$ascites)
label(dat$age) <- "Age (y)"
label(dat$sex) <- "Sex"
label(dat$stage) <- "Histologic stage of disease"
label(dat$edema) <- "Edema status"
label(dat$spiders) <- "Blood vessel malformations in the skin"
label(dat$hepato) <- "Presence of hepatomegaly or enlarged liver"
label(dat$ascites) <- "Presence of ascites"
label(dat$platelet) <- "Platelet count (× 109 per liter)"
label(dat$protime) <- "Standardised blood clotting time"
label(dat$albumin) <- "Serum albumin (g/dL)"
label(dat$alk.phos) <- "Alkaline phosphotase (U/L)"
label(dat$ast) <- "Aspartate aminotransferase (U/mL)"
label(dat$bili) <- "Serum bilirubin (mg/dL)"
label(dat$chol) <- "Serum cholesterol (mg/dL)"
label(dat$copper) <- "Urine copper (μg/day)"
label(dat$trig) <- "Triglycerides (mg/dL)"
table1(~ age + sex + stage + edema + spiders + hepato + ascites +
platelet + protime + albumin + alk.phos + ast + bili + chol +
copper + trig | trt, data=dat)
```
