https://github.com/beyondpie/smmtools
single-cell multi-omics tools
https://github.com/beyondpie/smmtools
Last synced: 5 months ago
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single-cell multi-omics tools
- Host: GitHub
- URL: https://github.com/beyondpie/smmtools
- Owner: beyondpie
- License: other
- Created: 2021-09-15T16:34:45.000Z (almost 5 years ago)
- Default Branch: main
- Last Pushed: 2022-06-30T20:24:50.000Z (almost 4 years ago)
- Last Synced: 2025-11-27T20:20:52.565Z (7 months ago)
- Language: R
- Size: 21.9 MB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.Rmd
- License: LICENSE
Awesome Lists containing this project
README
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# smmtools
The goal of __smmtools__ is to analyze 10x multi-omic ATAC sequencing data with SnapATAC pipelines.
This package is mainly based on ArchR, SnapATAC and SnapTools. The significant difference is that we decentralize the data representation, and make smmtools as a pool of different functional utilities. So that users can combine different functions and complete the tasks. Also it's quite easy to hack smmtools by either adding new functions or change some functions.
# Installation
## Install python package _smmuty_
```shell
## install the local package smmuty with utilities like scrublet, lenden algorithm support.
pip install smmuty
```
## Install R package of smmtools
``` r
# install.packages("devtools")
devtools::install_github("beyondpie/smmtools")
```