https://github.com/bhklab/hnscc_clinical_data_handling
Preprocessing the clinical data from the HNSCC dataset on TCIA
https://github.com/bhklab/hnscc_clinical_data_handling
Last synced: 3 months ago
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Preprocessing the clinical data from the HNSCC dataset on TCIA
- Host: GitHub
- URL: https://github.com/bhklab/hnscc_clinical_data_handling
- Owner: bhklab
- Created: 2024-09-30T15:25:14.000Z (9 months ago)
- Default Branch: main
- Last Pushed: 2024-11-22T17:45:24.000Z (7 months ago)
- Last Synced: 2025-01-28T09:49:52.164Z (5 months ago)
- Language: Jupyter Notebook
- Homepage:
- Size: 149 KB
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# Clinical Data Handling
This repository contains the code and data for preprocessing the clinical data from the [HNSCC dataset](https://www.cancerimagingarchive.net/collection/hnscc/) on TCIA.
## To Run
1. Install pixi: https://pixi.sh/dev/#installation
2. Activate the pixi environment:
```shell
$ pixi shell
```
3. Open ```workflow/scripts/clinical_data_handling.ipynb``` in a Jupyter notebook.
4. Select default kernel and run the notebook.