https://github.com/bhklab/orcestra
ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).
https://github.com/bhklab/orcestra
Last synced: about 2 months ago
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ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).
- Host: GitHub
- URL: https://github.com/bhklab/orcestra
- Owner: bhklab
- License: apache-2.0
- Created: 2019-05-11T01:45:41.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2024-12-31T13:14:34.000Z (5 months ago)
- Last Synced: 2025-03-27T14:02:21.923Z (2 months ago)
- Language: JavaScript
- Homepage:
- Size: 83.4 MB
- Stars: 5
- Watchers: 2
- Forks: 2
- Open Issues: 24
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Metadata Files:
- Readme: README.md
- License: LICENSE.md
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README
# ORCESTRA
ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).
PSets are generated with an automated pipeline by using a version controlling platform called Pachyderm. Upon completion of the pipeline, a newly generated PSet is uploaded to Zenodo, a data-sharing platform, and is assigned a DOI.
With Pachyderm's strict version controlling system, coupled with the DOI assignment, ORCESTRA ensures that your experiments with PSets are transparent and easily reproducible.
## Setup Instructions
- Clone the repo
```bash
git clone [email protected]:bhklab/ORCESTRA.git
cd ORCESTRA
```
- In the project directory, install all the server dependencies using `npm install
- To start the server run this command `npm start`
- Start the client (development mode) by running `npm start`
- Open [http://localhost:3000](http://localhost:3000) to view it in the browser.
## Dependencies
- React
- React-Router
- Express
- MongoDB
- Body-parser
## Dev Dependenices
- Nodemon
## Build Instructions
### `cd client && npm build`
Builds the app for production to the `build` folder.
It correctly bundles React in production mode and optimizes the build for the best performance.
## Server
- Production Server: [https://www.orcestra.ca/](https://www.orcestra.ca/)