https://github.com/bhklab/skinfibrosis
Skin Fibrosis
https://github.com/bhklab/skinfibrosis
analysis
Last synced: 3 months ago
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Skin Fibrosis
- Host: GitHub
- URL: https://github.com/bhklab/skinfibrosis
- Owner: bhklab
- Created: 2016-12-12T22:43:14.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2020-04-24T18:11:18.000Z (about 5 years ago)
- Last Synced: 2024-12-30T03:21:52.752Z (5 months ago)
- Topics: analysis
- Language: R
- Homepage:
- Size: 66.6 MB
- Stars: 0
- Watchers: 4
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
## Files to run the scripts
- CMAP perturbation object:
## Run the R scripts
* Fig1a-humanHeatmap.R
* Fig1b-temporalDataClustering&Overrep.R
* Fig2a-PharmaCogenomics.R
* Fig1d-clustering.R
# Set up the software environment
```
R version 3.2.3 (2015-12-10)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.9.5 (Mavericks)
locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] PharmacoGx_1.1.6
loaded via a namespace (and not attached):
[1] igraph_1.0.1 cluster_2.0.4 magrittr_1.5 BiocGenerics_0.14.0 maps_3.1.1 MASS_7.3-45 caTools_1.17.1 tools_3.2.3
[9] magicaxis_2.0.0 parallel_3.2.3 Biobase_2.28.0 piano_1.8.2 plotrix_3.6-3 KernSmooth_2.23-15 marray_1.46.0 gtools_3.5.0
[17] celestial_1.3 digest_0.6.10 lsa_0.73.1 RColorBrewer_1.1-2 mapproj_1.2-4 sets_1.0-16 SnowballC_0.5.1 bitops_1.0-6
[25] slam_0.1-32 sm_2.2-5.4 limma_3.24.15 gdata_2.17.0 downloader_0.4 relations_0.6-6 gplots_3.0.1 RANN_2.5
```