https://github.com/bhklab/tdgea

Time-dependent gene expression Analysis
https://github.com/bhklab/tdgea

Last synced: 4 months ago
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Time-dependent gene expression Analysis

• Host: GitHub
• URL: https://github.com/bhklab/tdgea
• Owner: bhklab
• Created: 2016-11-23T16:31:41.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2016-12-23T20:10:31.000Z (over 8 years ago)
• Last Synced: 2024-12-30T03:22:13.387Z (6 months ago)
• Language: R
• Size: 52.9 MB
• Stars: 0
• Watchers: 4
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Time-dependent gene expression Analysis (TDGEA)

These scripts analyze Affymetrix microarray data to look at relationships between time and expression levels.

## Running the Analysis

Generally follows this procedure:

1. Open R

1. Set working directory as `src`

1. Load data with `source("data/load_meta.R");`

1. Analyze data using a script of choice in the `analysis` folder

1. Load plotting functions with `source("visualization/plotting_functions.R");`

1. Create plots with a corresponding script in the `visualization` folder