https://github.com/bids-standard/bids-specification

Brain Imaging Data Structure (BIDS) Specification
https://github.com/bids-standard/bids-specification
bids data-standards neuroimaging standards
Last synced: 5 days ago
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Brain Imaging Data Structure (BIDS) Specification
Host: GitHub
URL: https://github.com/bids-standard/bids-specification
Owner: bids-standard
License: cc-by-4.0
Created: 2018-09-26T17:35:34.000Z (about 7 years ago)
Default Branch: master
Last Pushed: 2025-04-18T13:20:11.000Z (6 months ago)
Last Synced: 2025-04-19T02:25:17.365Z (6 months ago)
Topics: bids, data-standards, neuroimaging, standards
Language: Python
Homepage: https://bids-specification.readthedocs.io/
Size: 14.2 MB
Stars: 304
Watchers: 35
Forks: 177
Open Issues: 337
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Citation: CITATION.cff
- Codeowners: CODEOWNERS
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The [Brain Imaging Data Structure (BIDS)](https://bids.neuroimaging.io) is an emerging standard for the

organization of neuroimaging data.

In this repository, we develop the

[BIDS specification](https://bids-specification.readthedocs.io/en/latest/).

# When to use BIDS

To organize your data in BIDS, all you need is neuro data, a computer, and the

[BIDS specification](https://bids-specification.readthedocs.io/en/stable/).

BIDS currently supports the following data modalities with

[more to come in the future](https://bids.neuroimaging.io/extensions/index.html):

- MRI

- MEG

- EEG

- iEEG

- behavioral

- physiological

- PET

- microscopy

- NIRS

- motion

- MRS

# Formatting your data with BIDS

As a dataset curator, the GitHub repository and all files therein can be safely ignored.

Users should focus on [the rendered content](https://bids-specification.readthedocs.io/en/stable/).

The specification is provided in the form of a webpage, built using

[MkDocs](https://www.mkdocs.org/) and [Read the Docs](https://readthedocs.org/).

*Want to learn more about working with BIDS? Have a question, comment, or suggestion?*

1. Read some introductory material, most likely the very basic problems have already been addressed!

  - [BIDS Starter Kit](https://github.com/bids-standard/bids-starter-kit) for tutorials, wikis, templates, ...

2. Post your question in one of several channels where BIDS members are active

  - see: [BIDS communication channels](#bids-communication-channels)

# Contributing to BIDS

BIDS is a community-driven standard, and it depends on contributions from its members.

We welcome new contributors, and we appreciate all contributions to the project!

For a current list of our contributors, please see our [Contributors appendix](https://github.com/bids-standard/bids-specification/blob/master/src/appendices/contributors.md).

When you're ready to get started, check out [our contributing guidelines](https://github.com/bids-standard/bids-specification/blob/master/CONTRIBUTING.md).

We ask that all contributions to BIDS across all project-related spaces

(including but not limited to:

[GitHub](https://github.com/bids-standard), and the

[Google group](https://groups.google.com/forum/#!forum/bids-discussion); see

[BIDS communication channels](#bids-communication-channels))

adhere to our [code of conduct](https://github.com/bids-standard/bids-specification/blob/master/CODE_OF_CONDUCT.md).

# BIDS communication channels

## Main communication channels

  - "Issue" pages on the different GitHub repositories of the [`bids-standard` GitHub organization](https://github.com/bids-standard),

    such as the [BIDS specification repository](https://github.com/bids-standard/bids-specification/issues),

    for reporting problems or making suggestions

  - The [NeuroStars Discourse forum](https://neurostars.org/tags/bids), for asking usage questions

  - The [BrainHack Mattermost](https://mattermost.brainhack.org), for instant messaging

    (see also this [news item](https://bids.neuroimaging.io/blog/2020/06/24/Join%20the%20BIDS%20community%20on%20the%20BrainHack%20Mattermost.html))

  - The [Google group](https://groups.google.com/forum/#!forum/bids-discussion), for broader discussions and announcements surrounding BIDS

  - The [BIDS website "blog"](https://bids.neuroimaging.io/blog/index.html), similar to the Google group, for broader discussions and announcements

## Social media channels

- [X](https://x.com/BIDSstandard)

- [Mastodon](https://fosstodon.org/@bidsstandard)

- [Bluesky](https://bsky.app/profile/bidsstandard.bsky.social)

- [Youtube](https://www.youtube.com/channel/UCxZUcYfd_nvIVWAbzRB1tlw)

- [Instagram](https://www.instagram.com/bidsstandard/)

## Contributors

Thanks goes to these wonderful people.

  

    

      
_{Aaron Oliver-Taylor}
📖

      
_{Adam Li}
📖 💻

      
_{Adam Thomas}
📖

      
_{Adeen Flinker}
📖

      
_{Adina S. Wagner}
🎨 💻

      
_{Agah Karakuzu}
💬 📖 🔣 🤔 💻

      
_{Agnese Zazio}
📖

    

    

      
_{Aki Nikolaidis}
📖

      
_{Alberto Lazari}
📖

      
_{Alejandro de la Vega}
🐛 💻 ⚠️

      
_{Alessio Giacomel}
📖

      
_{Alex Rockhill}
📖 🔧 💻

      
_{Alexander Jones}
💻 🐛

      
_{Alexander L. Cohen}
🐛 💻 📖 💬

    

    

      
_{Alexander von Lautz}
📖

      
_{Alexandre D'Astous}
📖 💻

      
_{Alexandre Gramfort}
📖 💡

      
_{Alexandre Hutton}
📖

      
_{Alexandre Routier}
📖

      
_{Alexandru Foias}
📖 🔣

      
_{Ali Khan}
📖

    

    

      
_{Alizee Wickenheiser}
🔧

      
_{Alyssa Dai}
💻

      
_{Amber R. Hopkins}
📖

      
_{Ana Fouto}
📓

      
_{Anders Eklund}
📖 📢 💻

      
_{Andrea Pigorini}
📖

      
_{Andrew Hoopes}
📖

    

    

      
_{Andrew Jahn}
📓

      
_{Andrew Janke}
📖 💻

      
_{Anibal Sólon}
💻 🐛

      
_{Anthony Galassi}
📖 💻

      
_{Arianna Sala}
📖

      
_{Ariel Rokem}
📖 💻

      
_{Arjen Stolk}
📖

    

    

      
_{Arman Jahanpour}
💻

      
_{Arnaud Delorme}
📖 💡 🤔

      
_{Arnaud Marcoux}
📖

      
_{Arshitha Basavaraj}
📖 🚇 💻

      
_{Ashley G. Gillman}
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_{Athanasia Monika Mowinckel}
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_{Augustijn Vrolijk}
💻 📖

    

    

      
_{Aysegul Gunduz}
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_{Azeez Adebimpe}
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_{B. Nolan Nichols}
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_{Balint Kincses}
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_{Benjamin Beasley}
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_{Benjamin Dichter}
📖 💻 ⚠️

      
_{Benjamin Gagl}
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_{Bertrand Thirion}
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_{Boris Clénet}
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_{Bradley Voytek}
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_{Brent McPherson}
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_{Brett L. Foster}
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_{Brian A. Wandell}
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_{Brian N. Lundstrom}
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_{Camille Maumet}
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_{Carlo Miniussi}
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_{Cecile Madjar}
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_{Chris Benjamin}
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_{Chris Gahnström}
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_{Chris Holdgraf}
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_{Chris J. Gorgolewski}
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_{Chris Rorden}
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_{Christian Büchel}
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_{Christian Horea}
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_{Christine Rogers}
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_{Christophe Phillips}
📖

      
_{Christopher G. Schwarz}
💻

    

    

      
_{Christopher J. Honey}
📖

      
_{Christopher J. Markiewicz}
💬 🐛 💻 📖 🎨 💡 🤔 🔌 👀 🔧 📢 🔣 📋 🚧

      
_{Christopher Lee-Messer}
📖

      
_{Clara Moreau}
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_{Clint Hansen}
📖 🤔

      
_{Cody C Baker}
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_{Cyril Pernet}
💬 📝 📖 🎨 💡 📋 🤔 📢

    

    

      
_{Cyrus Eierud}
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_{D. Sturgeon}
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_{Dan Levitas}
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_{Dan Lurie}
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_{Daniel A. Handwerker}
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_{Daniel McCloy}
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_{David Alsop}
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_{David Boas}
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_{David Keator}
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_{David McAlpine}
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_{David Thomas}
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_{Dejan Draschkow}
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_{Desmond Oathes}
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_{Dianne Patterson}
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_{Dimitri Papadopoulos Orfanos}
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_{Dmitry Petrov}
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_{Dora Hermes}
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_{Dorien Huijser}
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_{Dorota Jarecka}
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_{Douglas N. Greve}
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_{Duncan Macleod}
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_{Dung Truong}
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_{Dustin Moraczewski}
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_{Dylan Nielson}
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_{Eduard Ort}
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_{Eleonora Marcantoni}
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_{Elizabeth Bock}
📖 💡

    

    

      
_{Elizabeth DuPre}
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_{Elke Warmerdam}
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_{Erdal Karaca}
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_{Eric A. Earl}
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_{Eric Achten}
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_{Eric Bridgeford}
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_{Erin W. Dickie}
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_{Ethan Blackwood}
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_{Eugene P. Duff}
📖

      
_{Ezequiel Mikulan}
📖 💻

      
_{Fede Raimondo}
💻

      
_{Felipe Orihuela-Espina}
📖

      
_{Fidel Alfaro Almagro}
💬 📖 💡 🔌

      
_{Filip Szczepankiewicz}
📖

    

    

      
_{Filippo Maria Castelli}
📖 🔣

      
_{Franco Pestilli}
📖 💻 🎨 💡 🤔 👀 🔧 📋 🔍 🚇 📢

      
_{Franklin W. Feingold}
📋 📝 ✅ 💬 🤔 🎨 📢 👀 🚇 🖋 📆 💻

      
_{François Tadel}
📖 🔌 💡

      
_{Friederike Breuer}
📖

      
_{Gaia Rizzo}
📖

      
_{Gang Chen}
📖

    

    

      
_{Gaël Varoquaux}
📖

      
_{Ghislain Vaillant}
💻

      
_{Giacomo Bertazzoli}
📖

      
_{Giacomo Guidali}
📖

      
_{Giacomo Mazzamuto}
📖 🔣

      
_{Gilles de Hollander}
📖

      
_{Gio Piantoni}
📖

    

    

      
_{Giovanna Nordio}
📖

      
_{Gitte M. Knudsen}
📖

      
_{Giulio Castegnaro}
📖

      
_{Giuseppe Gallitto}
📖

      
_{Graham Searle}
📖

      
_{Granville J. Matheson}
📖

      
_{Gregory Kiar}
📖 💻 🎨 🔧

    

    

      
_{Gregory Noack}
📖 💻 ⚠️

      
_{Greydon Gilmore}
📖 💻

      
_{Guillaume Flandin}
📖 💻

      
_{Guiomar Niso}
🤔 🎨 🔍 👀 📋 📝 🔧 🐛 💻 🔣 ✅ 💬 📖 💡 📢

      
_{Gunnar Schaefer}
📖

      
_{Gustav Nilsonne}
📖

      
_{Hamish Innes-Brown}
📖

    

    

      
_{Hanne D. Hansen}
📖

      
_{Hanzhang Lu}
📖

      
_{Hao-Ting Wang}
📖 🐛

      
_{Helena Cockx}
📖 🤔 💬

      
_{Henk Mutsaerts}
💬 🐛 💻 📖 💡 📋 🤔 📆 📢 📓

      
_{Hernando Ombao}
📖

      
_{Hugo Boniface}
📖 💻

    

    

      
_{Ilkay Isik}
📖

      
_{Ilona Lipp}
📖

      
_{International Neuroinformatics Coordinating Facility}
💵 📋

      
_{Iris Groen}
📖

      
_{Isaac To}
💻

      
_{Isla Staden}
📖

      
_{Jaap von der Aar}
📖

    

    

      
_{Jacob Sanz-Robinson}
💻

      
_{Jakub Kaczmarzyk}
📖 🔧 🚇

      
_{James Gholam}
📖

      
_{James Kent}
💬 💻

      
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📖

      
_{Jan Petr}
💬 🐛 💻 📖 🔣 💡 📋 🤔 📆 ⚠️ 📢

      
_{Jan Valosek}
💻

    

    

      
_{Jan-Mathijs Schoffelen}
📖

      
_{Jean-Baptiste Poline}
📖 📢 🤔 🎨 💻

      
_{Jean-Charles Mariani}
📖 🤔

      
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📖 💻

      
_{Jean-Dominique Gallezot}
📖

      
_{Jean-Philippe Lachaux}
📖

      
_{Jeanette Mumford}
📖

    

    

      
_{Jefferson Casimir}
🔧 💻 🔣 📖

      
_{Jeffrey G. Ojemann}
📖

      
_{Jeffrey S. Grethe}
💬 🐛 ✅ 📢 💻

      
_JegouA
💻

      
_{Jelle Dalenberg}
📖

      
_{Jeremy Moreau}
📖 💡

      
_{Jessica A. Turner}
📖

    

    

      
_{Jochem Rieger}
📖

      
_{John Detre}
📖

      
_{John Pellman}
📖

      
_{John T. Wodder}
💻

      
_{Joke Durnez}
📖 🔧 💻

      
_{Jon Haitz Legarreta Gorroño}
💻 📖

      
_{Jonathan C. Lau}
📖

    

    

      
_{Jonathan Winawer}
📖

      
_{Joost Kuijer}
📖

      
_{Jose Manuel Saborit}
📖

      
_{Joseph Wexler}
📖 💡

      
_{Joseph Woods}
📖

      
_{Julia Guiomar Niso Galán}
🤔 🎨 🔍 👀 📋 📝 🔧 🐛 💻 🔣 ✅ 💬 📖 💡 📢

      
_{Julia Sprenger}
📖

    

    

      
_{Julia-Katharina Pfarr}
💻 📖 🔧 💡

      
_{Julien Cohen-Adad}
📖 🔣 🤔

      
_{Julio C Hernandez Pavon}
📖

      
_{Julius Welzel}
📖 💡 🐛 💻 🔣 🤔 💬 📓

      
_{Jérémie Fouquet}
💻

      
_{Kabilar Gunalan}
💻

      
_{Kai J. Miller}
📖

    

    

      
_{Kangjoo Lee}
📖

      
_{Katja Heuer}
🔧

      
_{Kay Robbins}
💻 📖 🐛

      
_{Kevin Larcher}
💬

      
_{Kimberly Ray}
📖 📋 🤔 📆

      
_{Kirstie Whitaker}
📖 💡 🔍 🤔 📢 💬 💻

      
_{Klara Gregorova}
📖

    

    

      
_{Klaus Gramann}
📖 🤔

      
_{Kris Thielemans}
📖

      
_{Kristofer Bouchard}
📖

      
_{Kurt Schilling}
📖

      
_{Laetitia Fesselier}
🔧

      
_{Laura and John Arnold Foundation}
💵

      
_{Leandro Beltrachini}
📖

    

    

      
_{Lee Kamentsky}
📖

      
_{Lennart Walger}
📖

      
_{Lennart Wittkuhn}
📖

      
_{Liberty Hamilton}
📖

      
_{Luca Pollonini}
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_{Luis Hernandez-Garcia}
📖 📓

      
_{Luke J. Edwards}
📖 💬 💻

    

    

      
_{Lyuba Zehl}
📖

      
_{Mainak Jas}
📖 💻

      
_{Mana Biabani}
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_{Manjari Narayan}
📖

      
_{Manuel Mercier}
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_{Maqsood Yaqub}
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_{Marc Lalancette}
📖 💻

    

    

      
_{Marco Castellaro}
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_{Maria Ermolova}
📖

      
_{Maria de la Iglesia}
📖

      
_{Marie-Hélène Bourget}
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🔣

      
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_{Melissa Kline Struhl}
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_{Michael Firbank}
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_{Michael Hanke}
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_{Michael P. Harms}
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_{Michael P. Milham}
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_{Monique Denissen}
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_{Olivier David}
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_{Paule-Joanne Toussaint}
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_{Petra Ritter}
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_{R. Cameron Craddock}
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_{Robert Luke}
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_{Roberto Toro}
🔧

      
_{Rohan Goyal}
📖

      
_{Ross W. Blair}
💻

      
_{Russell A. Poldrack}
📖 🔍 📢

    

    

      
_{Rémi Adon}
📖

      
_{Samir Das}
📖

      
_{Samuel Garcia}
🤔 👀 📖

      
_{Samuel Guay}
📖

      
_{Samuel Le Meur-Diebolt}
📖 🤔

      
_{Samuel Nastase}
💻

      
_{Sara Elgayar}
📖

    

    

      
_{Sasha D'Ambrosio}
📖

      
_{Satrajit S. Ghosh}
📖 💻

      
_{Scott Makeig}
📖

      
_{Sebastian Urchs}
💻 📖 🤔

      
_{Sein Jeung}
📖 💡 🐛 💻 🔣 🤔 💬 🔧 📓

      
_{Seyed Yahya Shirazi}
📖 🤔 💻

      
_{Shashank Bansal}
📖

    

    

      
_{Silvia Isabella}
📖

      
_{Sjoerd B. Vos}
📖

      
_{Soichi Hayashi}
📖 🔧 🐛

      
_{Stefan Appelhoff}
📖 💬 🤔 🐛 💡 💻 👀 ⚠️ 📢 ✅ 🔧 🔌 📝 🚧 🔣

      
_{Stefanie De Smet}
📖

      
_{Stephan Bickel}
📖

      
_{Steven Meisler}
🐛 💻 💬 🔧 📓

    

    

      
_{Suyash Bhogawar}
📖 💡 ⚠️ 🔧 💬

      
_{Sylvain Baillet}
📖 🔍

      
_{Sylvain Takerkart}
📖

      
_{Sébastien Tourbier}
🤔 👀 📢 🐛 💻 📖

      
_{Sören Grothkopp}
📖 🔣 📓

      
_{Tal Pal Attia}
📖

      
_{Tal Yarkoni}
💻 📖 🤔 🔍 🔌 👀 📢 🐛 🎨

    

    

      
_{Tamas Spisak}
📖

      
_{Tamás Józsa}
📓

      
_{Taylor Khuhn}
📖

      
_{Taylor Salo}
💬 📖 🔌 💻

      
_{Teon L. Brooks}
📖 💻 ⚠️ 💬 👀 🤔 🔧 🐛 📢

      
_{Thomas Deffieux}
📖 🤔

      
_{Thomas E. Nichols}
📖 📢 🔧 👀 🚧 💻

    

    

      
_{Thomas Funck}
📖

      
_{Thomas Kirk}
📖

      
_{Thomas Okell}
📖

      
_{Tibor Auer}
💬 📖 💡 🔧 📢 🐛 🤔

      
_{Til Ole Bergmann}
📖

      
_{Timo Dickscheid}
📖

      
_{Timotheus Berg}
📖 🤔 📓

    

    

      
_{Tobey Betthauser}
📖

      
_{Tobias Bengfort}
💻

      
_{Tom Hampshire}
📖

      
_{Tor Wager}
📖

      
_{Torsten Stöter}
📖

      
_{Travis Riddle}
📖 🔧 🐛

      
_{Tristan Glatard}
📖 💻

    

    

      
_{Tyler Collins}
🔣 🔧

      
_{Ulrike Bingel}
📖

      
_{Vanessa Sochat}
📖

      
_{Vasudev Raguram}
💻 🎨 📖 🔧

      
_{Victor H. Souza}
📖

      
_{Vince D. Calhoun}
📖

      
_{Vittorio Iacovella}
📖

    

    

      
_{Viviana Siless}
📖

      
_{Vladimir Litvak}
📖

      
_{Wietske van der Zwaag}
🔣 💬

      
_{William Clarke}
📖

      
_{William Triplett}
📖

      
_{Wouter V. Potters}
💻 📖

      
_{Xiangrui Li}
📖 💻

    

    

      
_{Yaroslav O. Halchenko}
📖 📢 🔧 💬 🐛 💻 🔣 🔍 🤔 🔌 👀 📓 🚇

      
_{Yaël Balbastre}
💻

      
_{Yoni Ashar}
📖

      
_{Yuan Wang}
💻

      
_{Zachary Michael}
📖

      
_{Zhi-De Deng}
📖

      
_ezemikulan
💻

    

    

      
_josator2
💻

      
_monkeyman192
💻

      
_patrick-g-h
💻

      
_tstoeter
💻

      
_{Étienne Bergeron}
🔣 💻
ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Awesome

https://github.com/bids-standard/bids-specification

Awesome Lists containing this project

README
