https://github.com/bigdatagenomics/bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
https://github.com/bigdatagenomics/bdg-formats

Last synced: 5 days ago
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Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

• Host: GitHub
• URL: https://github.com/bigdatagenomics/bdg-formats
• Owner: bigdatagenomics
• License: apache-2.0
• Created: 2014-02-14T19:43:17.000Z (almost 11 years ago)
• Default Branch: master
• Last Pushed: 2024-10-23T00:18:30.000Z (2 months ago)
• Last Synced: 2024-12-22T08:05:21.793Z (12 days ago)
• Language: Shell
• Homepage:
• Size: 257 KB
• Stars: 39
• Watchers: 18
• Forks: 35
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGES.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE.txt
  • Code of conduct: CODE_OF_CONDUCT.md

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bdg-formats

===

[![Build Status](https://travis-ci.org/bigdatagenomics/bdg-formats.svg?branch=master)](https://travis-ci.org/bigdatagenomics/bdg-formats)

[![Maven Central](https://img.shields.io/maven-central/v/org.bdgenomics.bdg-formats/bdg-formats.svg?maxAge=600)](http://search.maven.org/#search%7Cga%7C1%7Corg.bdgenomics.bdg-formats)

[![API Documentation](http://javadoc.io/badge/org.bdgenomics.bdg-formats/bdg-formats.svg?color=brightgreen&label=scaladoc)](http://javadoc.io/doc/org.bdgenomics.bdg-formats/bdg-formats)

### Summary

[Big Data Genomics][BDG] (BDG) bdg-formats provides [Apache Avro][Avro] schema

for genomic data such as genomic sequences, reads, alignments, variants/genotypes,

and features.  The schema are used to generate a library of Java code used by

downstream projects such as [ADAM][ADAM], [Cannoli][Cannoli], and [Mango][Mango].

### Using bdg-formats

Add the following dependency to your Maven build:

```xml

  org.bdgenomics.bdg-formats

  bdg-formats

  ${version}

```

### Building bdg-formats

Install [Apache Maven][Maven] version 3.3.3 or later.

```bash

$ mvn package

```

### License

bdg-formats is released under an [Apache 2.0 license](LICENSE.txt).

[ADAM]: https://github.com/bigdatagenomics/adam

[Cannoli]: https://github.com/bigdatagenomics/cannoli

[Avro]: http://avro.apache.org

[BDG]: http://bdgenomics.org

[Mango]: https://github.com/bigdatagenomics/mango

[Maven]: http://maven.apache.org