https://github.com/bihealth/scelvis
:sparkler: SCelVis - web-based visualization of single-cell data. :arrow_right: :arrow_right: Demo :arrow_right::arrow_right:
https://github.com/bihealth/scelvis
Last synced: 2 months ago
JSON representation
:sparkler: SCelVis - web-based visualization of single-cell data. :arrow_right: :arrow_right: Demo :arrow_right::arrow_right:
- Host: GitHub
- URL: https://github.com/bihealth/scelvis
- Owner: bihealth
- License: mit
- Created: 2019-05-10T07:54:40.000Z (almost 7 years ago)
- Default Branch: master
- Last Pushed: 2024-03-20T15:30:06.000Z (almost 2 years ago)
- Last Synced: 2025-12-09T07:51:30.191Z (2 months ago)
- Language: Python
- Homepage: https://scelvis-demo.cubi.bihealth.org
- Size: 70.8 MB
- Stars: 22
- Watchers: 11
- Forks: 5
- Open Issues: 10
-
Metadata Files:
- Readme: README.rst
- Changelog: HISTORY.rst
- Contributing: CONTRIBUTING.rst
- License: LICENSE
- Authors: AUTHORS.rst
Awesome Lists containing this project
- awesome-expression-browser - SCelVis - seq data. Preprint: https://www.biorxiv.org/content/10.1101/713008v1 (Software list)
README
=======================================
SCelVis: Easy Single-Cell Visualization
=======================================
.. image:: https://img.shields.io/conda/dn/bioconda/scelvis.svg?label=Bioconda
:target: https://bioconda.github.io/recipes/scelvis/README.html
.. image:: https://img.shields.io/pypi/pyversions/scelvis.svg
:target: https://www.python.org
.. image:: https://img.shields.io/pypi/v/scelvis.svg
:target: https://pypi.python.org/pypi/scelvis
.. image:: https://api.codacy.com/project/badge/Grade/9ee0ec1424c143dfad9977a649f917f7
:target: https://www.codacy.com/app/bihealth/scelvis?utm_source=github.com&utm_medium=referral&utm_content=bihealth/scelvis&utm_campaign=Badge_Grade
.. image:: https://api.codacy.com/project/badge/Coverage/9ee0ec1424c143dfad9977a649f917f7
:target: https://www.codacy.com/app/bihealth/scelvis?utm_source=github.com&utm_medium=referral&utm_content=bihealth/scelvis&utm_campaign=Badge_Coverage
.. image:: https://readthedocs.org/projects/scelvis/badge/?version=latest
:target: https://scelvis.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status
.. image:: https://travis-ci.org/bihealth/scelvis.svg?branch=master
:target: https://travis-ci.org/bihealth/scelvis
.. image:: https://zenodo.org/badge/185944510.svg
:target: https://zenodo.org/badge/latestdoi/185944510
-------------
Documentation
-------------
The SCelVis documentation at `ReadTheDocs.org `_ contains comprehensive information including a `Tutorial `_.
-----
Movie
-----
.. image:: docs_manual/figures/scelvis_movie.gif
:height: 400px
:align: center
------------
Installation
------------
You can install with Pip and Bioconda or run directly via Docker.
.. code-block:: shell
$ pip install scelvis
# OR
$ conda install scelvis
# OR
$ docker run ghcr.io/bihealth/scelvis:0.8.8-0 scelvis --help
Look up the latest version (instead of ``0.8.8-0`` to use at `here `_)
---------------------
Building Docker Image
---------------------
1. Push changes to Github (we need a [git tree-ish](https://stackoverflow.com/questions/4044368/what-does-tree-ish-mean-in-git), so a tag works as well as a feature branch).
2. Call ``GIT_TAG=tag-or-branch bash docker/build-docker.sh``.
3. Run with ``docker run ghcr.io/bihealth/scelvis:[version]-0``.
4. Push with ``docker push ghcr.io/bihealth/scelvis:[version]-0``.