https://github.com/bio2bel/sider
A Bio2BEL package for the Side Effect Resource (SIDER; http://sideeffects.embl.de/)
https://github.com/bio2bel/sider
biological-expression-language chemistry side-effects sider
Last synced: 5 months ago
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A Bio2BEL package for the Side Effect Resource (SIDER; http://sideeffects.embl.de/)
- Host: GitHub
- URL: https://github.com/bio2bel/sider
- Owner: bio2bel
- License: mit
- Created: 2018-04-11T19:01:40.000Z (about 8 years ago)
- Default Branch: master
- Last Pushed: 2019-10-24T12:31:45.000Z (over 6 years ago)
- Last Synced: 2026-01-03T13:43:47.956Z (6 months ago)
- Topics: biological-expression-language, chemistry, side-effects, sider
- Language: Jupyter Notebook
- Homepage:
- Size: 48.8 KB
- Stars: 1
- Watchers: 1
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.rst
- License: LICENSE
Awesome Lists containing this project
README
Bio2BEL SIDER |build| |coverage| |documentation| |zenodo|
=========================================================
Converts the Side Effect Resource (SIDER) to BEL.
Installation |pypi_version| |python_versions| |pypi_license|
------------------------------------------------------------
``bio2bel_sider`` can be installed easily from `PyPI `_ with
the following code in your favorite terminal:
.. code-block:: sh
$ python3 -m pip install bio2bel_sider
or from the latest code on `GitHub `_ with:
.. code-block:: sh
$ python3 -m pip install git+https://github.com/bio2bel/sider.git
Setup
-----
SIDER can be downloaded and populated from either the Python REPL or the automatically installed command line
utility.
Python REPL
~~~~~~~~~~~
.. code-block:: python
>>> import bio2bel_sider
>>> sider_manager = bio2bel_sider.Manager()
>>> sider_manager.populate()
Command Line Utility
~~~~~~~~~~~~~~~~~~~~
.. code-block:: bash
bio2bel_sider populate
Citations
---------
- Kuhn, M., *et al.* (2016). `The SIDER database of drugs and side effects `_. Nucleic Acids Research, 44(D1), D1075–D1079.
.. |build| image:: https://travis-ci.com/bio2bel/sider.svg?branch=master
:target: https://travis-ci.com/bio2bel/sider
:alt: Build Status
.. |coverage| image:: https://codecov.io/gh/bio2bel/sider/coverage.svg?branch=master
:target: https://codecov.io/gh/bio2bel/sider?branch=master
:alt: Coverage Status
.. |documentation| image:: http://readthedocs.org/projects/bio2bel-sider/badge/?version=latest
:target: http://bio2bel.readthedocs.io/projects/sider/en/latest/?badge=latest
:alt: Documentation Status
.. |climate| image:: https://codeclimate.com/github/bio2bel/sider/badges/gpa.svg
:target: https://codeclimate.com/github/bio2bel/sider
:alt: Code Climate
.. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_sider.svg
:alt: Stable Supported Python Versions
.. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_sider.svg
:alt: Current version on PyPI
.. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_sider.svg
:alt: MIT License
.. |zenodo| image:: https://zenodo.org/badge/129140922.svg
:target: https://zenodo.org/badge/latestdoi/129140922