https://github.com/biobakery/galaxy_metaphlan2
https://github.com/biobakery/galaxy_metaphlan2
biobakery galaxy public tools
Last synced: 3 months ago
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- Host: GitHub
- URL: https://github.com/biobakery/galaxy_metaphlan2
- Owner: biobakery
- Created: 2020-05-18T17:06:40.000Z (about 5 years ago)
- Default Branch: master
- Last Pushed: 2020-05-18T17:08:22.000Z (about 5 years ago)
- Last Synced: 2025-01-22T06:17:49.656Z (4 months ago)
- Topics: biobakery, galaxy, public, tools
- Language: Python
- Size: 16.6 KB
- Stars: 0
- Watchers: 7
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# Installation instructions for MetaPhlAn2 in a Galaxy environment.
These instructions require the Mercurial versioning system, galaxy, and an internet connection.
# For general information about MetaPhlAn2 please refer to:
```
https://github.com/biobakery/metaphlan
```
# Installation procedure: MetaPhlAn2 under Galaxy
Go to the ```//usr/local/galaxy-dist/tools``` directory
Clone metaphlan2 by entering the following command
```git clone https://github.com/biobakery/MetaPhlAn.git```
Clone this repository somewhere: It will create a directory named "galaxy_metaphlan2"
Create a directory named "metaphlan2" under /galaxy-dist/tools/metaphlan2
Copy member metaphlan2.xml from galaxy_metaphlan2 on to /galaxy-dist/tools/metaphlan2
Update member tool_conf.xml in the galaxy directory adding the following:
```
```
Recycle galaxy
# Note:
Once the repository will e upladed to the tool shed, the instructions will be updated accordingly