https://github.com/bioconductor/ensemblvep
R Interface to Ensembl Variant Effect Predictor
https://github.com/bioconductor/ensemblvep
bioconductor-package core-package
Last synced: about 1 year ago
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R Interface to Ensembl Variant Effect Predictor
- Host: GitHub
- URL: https://github.com/bioconductor/ensemblvep
- Owner: Bioconductor
- Created: 2017-09-01T20:18:19.000Z (over 8 years ago)
- Default Branch: devel
- Last Pushed: 2024-05-01T18:35:20.000Z (about 2 years ago)
- Last Synced: 2024-05-09T07:46:54.702Z (about 2 years ago)
- Topics: bioconductor-package, core-package
- Language: R
- Homepage: https://bioconductor.org/packages/ensemblVEP
- Size: 192 KB
- Stars: 4
- Watchers: 10
- Forks: 4
- Open Issues: 2
-
Metadata Files:
- Readme: README
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README
=========================
Installing ensemblVEP
=========================
To use ensemblVEP, the Ensembl Variant Effect Predictor (VEP)
software must be installed.
----------------------------------
Download and Install Ensembl VEP
----------------------------------
Follow the download and installation instructions on this page:
https://useast.ensembl.org/info/docs/tools/vep/script/vep_download.html
On Windows you may need to install the perl modules
perl-DBD-mysql and perl-DBI if you do not have them.
All of this is documented on the Ensembl VEP web page.
----------------------------------
Confirm installation
----------------------------------
Check that vep is executable and in
your path. This may involve modifying .bashrc and / or .profile
files.
On Unix and Mac:
vep
On Windows:
perl vep