https://github.com/bioconductor/geneplotter

Graphics related functions for Bioconductor
https://github.com/bioconductor/geneplotter

bioconductor-package core-package

Last synced: about 1 year ago
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Graphics related functions for Bioconductor

• Host: GitHub
• URL: https://github.com/bioconductor/geneplotter
• Owner: Bioconductor
• Created: 2017-09-01T20:19:07.000Z (almost 9 years ago)
• Default Branch: devel
• Last Pushed: 2024-05-01T18:36:32.000Z (about 2 years ago)
• Last Synced: 2024-05-09T07:47:13.438Z (about 2 years ago)
• Topics: bioconductor-package, core-package
• Language: R
• Homepage: https://bioconductor.org/packages/geneplotter
• Size: 7.32 MB
• Stars: 3
• Watchers: 9
• Forks: 2
• Open Issues: 3
• Metadata Files:
  • Readme: README

Awesome Lists containing this project

README

          
geneplotter contains plotting functions for microarrays

 To Do:

  o A mechanism to order the rows and columns of the microarray matrix.

    order.restricted is a start. We need a mechanism for dendrograms.

    Dan Carr suggested that there was a method based on Principle components. 

  o Links to the annotation library. Using locator(1) we should be able

    to simulate interaction with the plot and look up genes at LocusLink

    etc.

  o Color scheme for Red-Blue is the same as Cheng's but the Red Green still

    looks funny.

  o Need some notion of a viewport so that we can zoom in and out. Perhaps

    Paul Murrell, Ross Ihaka or Saikat DebRoy can help out in this regard.

  o Lots of other visualization methods need to be implemented.