https://github.com/biocore/calour

exploratory and interactive microbiome analyses based on heatmaps
https://github.com/biocore/calour

bioinformatics exploratory heatmap jupyter-notebook microbiome

Last synced: 3 months ago
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exploratory and interactive microbiome analyses based on heatmaps

• Host: GitHub
• URL: https://github.com/biocore/calour
• Owner: biocore
• License: bsd-3-clause
• Created: 2016-01-26T19:22:48.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2025-01-27T23:04:45.000Z (8 months ago)
• Last Synced: 2025-06-20T22:47:12.730Z (4 months ago)
• Topics: bioinformatics, exploratory, heatmap, jupyter-notebook, microbiome
• Language: Python
• Size: 42 MB
• Stars: 27
• Watchers: 13
• Forks: 22
• Open Issues: 67
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • Contributing: CONTRIBUTING.md
  • License: COPYING.txt

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README

          
CALOUR

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[![Binder](https://mybinder.org/badge.svg)](https://mybinder.org/v2/gh/biocore/calour/master?filepath=doc%2Fsource%2Fnotebooks)

[![Build Status](https://travis-ci.org/biocore/calour.png?branch=master)](https://travis-ci.org/biocore/calour)

[![Coverage Status](https://coveralls.io/repos/github/biocore/calour/badge.svg?branch=master)](https://coveralls.io/github/biocore/calour?branch=master)

exploratory and interactive microbiome analysis based on heatmaps

[Installation](https://github.com/biocore/calour/blob/master/INSTALL.md)

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[Documentation](http://biocore.github.io/calour)

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[Mouse & Keyboard Operation](http://biocore.github.io/calour/generated/calour.heatmap.plot.html#calour.heatmap.plot)

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[Change History](https://github.com/biocore/calour/blob/master/CHANGELOG.md)

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[How to Contribute](https://github.com/biocore/calour/blob/master/CONTRIBUTING.md)

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Please Cite

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[Xu ZZ, Amir A, Sanders J, Zhu Q, Morton JT, Bletz MC, Tripathi A, Huang S, McDonald D, Jiang L, et al. (2019) Calour: an Interactive, Microbe-Centric Analysis Tool. mSystems, 4, e00269-18.](https://msystems.asm.org/content/4/1/e00269-18)