https://github.com/biocpy/biocpy

Interface to all BiocPy packages
https://github.com/biocpy/biocpy

biocpy

Last synced: about 1 month ago
JSON representation

Interface to all BiocPy packages

• Host: GitHub
• URL: https://github.com/biocpy/biocpy
• Owner: BiocPy
• License: mit
• Created: 2022-06-17T13:49:24.000Z (over 2 years ago)
• Default Branch: master
• Last Pushed: 2023-07-24T04:59:56.000Z (over 1 year ago)
• Last Synced: 2024-11-11T18:36:14.387Z (about 2 months ago)
• Topics: biocpy
• Language: Python
• Homepage: https://biocpy.github.io/tutorial/
• Size: 2.83 MB
• Stars: 2
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • Contributing: CONTRIBUTING.rst
  • License: LICENSE.txt

Awesome Lists containing this project

README

        
# BiocPy

Installs all [BiocPy](https://github.com/BiocPy) packages. The package itself does not provide any functionality on its own. It provides an 

- easier way to install all ***core*** packages

- an interface to access the base data representations or classes

## Install

Package is published to [PyPI](https://pypi.org/project/biocpy/)

```shell

pip install biocpy

```

## Usage

To import any of the data classes, 

```python

from biocpy.genomicranges import GenomicRanges

from biocpy.summarizedexperiment import SummarizedExperiment

from biocpy.singlecellexperiment import SingleCellExperiment 

from biocpy.multiassayexperiment import MultiAssayExperiment

gr = GenomicRange(...)

se = SummarizedExperiment(...)

sce = SingleCellExperiment(...)

mae = MultiAssayExperiment(...)

```

For more use cases, checkout the [documentation](https://biocpy.github.io/BiocPy/).

## Note

This project has been set up using PyScaffold 4.1.1. For details and usage

information on PyScaffold see https://pyscaffold.org/.