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https://github.com/bioinformatics-core-shared-training/docker-4-bioinformatics
Short Course to get Bioinformaticians at CRUK-CI up-to-speed on Docker
https://github.com/bioinformatics-core-shared-training/docker-4-bioinformatics
Last synced: about 1 month ago
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Short Course to get Bioinformaticians at CRUK-CI up-to-speed on Docker
- Host: GitHub
- URL: https://github.com/bioinformatics-core-shared-training/docker-4-bioinformatics
- Owner: bioinformatics-core-shared-training
- Created: 2016-08-11T20:59:52.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2016-11-11T11:59:43.000Z (about 8 years ago)
- Last Synced: 2024-06-07T19:48:34.852Z (6 months ago)
- Language: HTML
- Homepage: http://bioinformatics-core-shared-training.github.io/docker-4-bioinformatics/
- Size: 36.1 MB
- Stars: 11
- Watchers: 7
- Forks: 9
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
- awesome-bacteria - docker-4-bioinformatics - Introduction to Docker for Bioinformatics (2017). (Educational resources / Docker)
README
# docker-4-bioinformatics
Short Course to get Bioinformaticians at CRUK-CI up-to-speed on Docker
# Use-cases
1. You want to try out some new software, and the developers have created a docker container
+ e.g. delly
+ https://hub.docker.com/r/trausch/delly/
2. Creating a sandbox environment for a training course
+ https://github.com/bioinformatics-core-shared-training/cruk-summer-school-2016
3. Creating a reproducible environment for your analysis
+ https://github.com/sje30/waverepo
4. Release you entire pipieline
+ https://github.com/cancerit/cgpbox
# References:-
- Bio in Docker workshop
http://f1000research.com/channels/containers?&selectedDomain=SLIDES
- Short youtube explanation
https://youtu.be/aLipr7tTuA4
- The impact of Docker containers on the performance of genomic pipelines
https://peerj.com/articles/1273/
- Stephen Eglen Reproducible vignette in docker
https://github.com/sje30/waverepo