https://github.com/biojulia/bed.jl
https://github.com/biojulia/bed.jl
bed-format bioinformatics
Last synced: about 1 month ago
JSON representation
- Host: GitHub
- URL: https://github.com/biojulia/bed.jl
- Owner: BioJulia
- License: mit
- Created: 2018-10-09T02:30:35.000Z (over 6 years ago)
- Default Branch: develop
- Last Pushed: 2024-07-31T08:51:03.000Z (10 months ago)
- Last Synced: 2025-04-11T12:52:49.160Z (about 1 month ago)
- Topics: bed-format, bioinformatics
- Language: Julia
- Size: 268 KB
- Stars: 6
- Watchers: 9
- Forks: 6
- Open Issues: 6
-
Metadata Files:
- Readme: README.md
- Funding: .github/FUNDING.yml
- License: LICENSE
Awesome Lists containing this project
README
# 
BED.jl
[](https://www.repostatus.org/#active)
[](https://github.com/BioJulia/BED.jl/releases/latest)
[](https://github.com/BioJulia/BED.jl/blob/master/LICENSE)
[](https://biojulia.github.io/BED.jl/stable)
[](https://biojulia.github.io/BED.jl/dev/)
> This project follows the [semver](http://semver.org) pro forma and uses the [git-flow branching model](https://nvie.com/posts/a-successful-git-branching-model/ "original blog post").
## Description
BED provides I/O and utilities for the [BED file format](https://samtools.github.io/hts-specs/BEDv1.pdf).
## Installation
You can install the BED package from the [Julia REPL](https://docs.julialang.org/en/v1/manual/getting-started/).
Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), then enter the following command:
```julia
add BED
```
If you are interested in the cutting edge of the development, please check out the [develop branch](https://github.com/BioJulia/BED.jl/tree/develop) to try new features before release.
## Testing
BED is tested against Julia `1.X` on Linux, OS X, and Windows.
**Latest build status:**
[](https://github.com/BioJulia/BED.jl/actions/workflows/UnitTests.yml)
[](https://github.com/BioJulia/BED.jl/actions/workflows/Documentation.yml)
[](https://codecov.io/gh/BioJulia/BED.jl)
## Contributing
We appreciate [contributions](https://github.com/BioJulia/BED.jl/graphs/contributors) from users including reporting bugs, fixing issues, improving performance and adding new features.
Take a look at the [contributing files](https://github.com/BioJulia/Contributing) detailed contributor and maintainer guidelines, and code of conduct.
### Financial contributions
We also welcome financial contributions in full transparency on our [open collective](https://opencollective.com/biojulia).
Anyone can file an expense.
If the expense makes sense for the development the core contributors and the person who filed the expense will be reimbursed.
## Backers & Sponsors
Thank you to all our backers and sponsors!
Love our work and community? [Become a backer](https://opencollective.com/biojulia#backer).
[](https://opencollective.com/biojulia#backers)
Does your company use BioJulia?
Help keep BioJulia feature rich and healthy by [sponsoring the project](https://opencollective.com/biojulia#sponsor).
Your logo will show up here with a link to your website.
[](https://opencollective.com/biojulia/sponsor/0/website)
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## Questions?
If you have a question about contributing or using BioJulia software, come on over and chat to us on [the Julia Slack workspace](https://julialang.org/slack/), or you can try the [Bio category of the Julia discourse site](https://discourse.julialang.org/c/domain/bio).