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https://github.com/biojulia/bigwig.jl

bigwig bigwig-files bigwig-reader bioinformatics

Last synced: 25 days ago
JSON representation

Host: GitHub
URL: https://github.com/biojulia/bigwig.jl
Owner: BioJulia
License: mit
Created: 2018-10-09T02:32:58.000Z (about 6 years ago)
Default Branch: develop
Last Pushed: 2023-02-28T04:26:22.000Z (almost 2 years ago)
Last Synced: 2024-10-30T01:36:58.838Z (2 months ago)
Topics: bigwig, bigwig-files, bigwig-reader, bioinformatics
Language: Julia
Size: 166 KB
Stars: 5
Watchers: 12
Forks: 2
Open Issues: 0
Metadata Files:
- Readme: README.md
- Funding: .github/FUNDING.yml
- License: LICENSE

Awesome Lists containing this project

README

        #  BigWig.jl

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)

[![Latest Release](https://img.shields.io/github/release/BioJulia/BigWig.jl.svg)](https://github.com/BioJulia/BigWig.jl/releases/latest)

[![DOI](https://zenodo.org/badge/152175873.svg)](https://zenodo.org/badge/latestdoi/152175873)

[![MIT license](https://img.shields.io/badge/license-MIT-green.svg)](https://github.com/BioJulia/BigWig.jl/blob/master/LICENSE)

[![Stable documentation](https://img.shields.io/badge/docs-stable-blue.svg)](https://biojulia.github.io/BigWig.jl/stable)

[![Latest documentation](https://img.shields.io/badge/docs-dev-blue.svg)](https://biojulia.github.io/BigWig.jl/dev/)

[![Join the chat at https://gitter.im/BioJulia/BigWig.jl](https://badges.gitter.im/BioJulia/BigWig.jl.svg)](https://gitter.im/BioJulia/BigWig.jl)

> This project follows the [semver](http://semver.org) pro forma and uses the [git-flow branching model](https://nvie.com/posts/a-successful-git-branching-model/ "original blog post").

## Description

The BigWig package provides data representation and IO tools for the bigWig file format.

The bigWig format is a binary format for associating floating point numbers with bases of the genome.

The bigWig files are indexed to quickly fetch specific regions.

## Installation

You can install the BigWig package from the [Julia REPL](https://docs.julialang.org/en/v1/manual/getting-started/).

Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), then enter the following command:

```julia

add BigWig

```

If you are interested in the cutting edge of the development, please check out the [develop branch](https://github.com/BioJulia/BigWig.jl/tree/develop) to try new features before release.

## Testing

BigWig is tested against Julia `1.X` on Linux, OS X, and Windows.

**Latest build status:**

[![Unit tests](https://github.com/BioJulia/BigWig.jl/workflows/Unit%20tests/badge.svg?branch=master)](https://github.com/BioJulia/BigWig.jl/actions?query=workflow%3A%22Unit+tests%22+branch%3Amaster)

[![Documentation](https://github.com/BioJulia/BigWig.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/BigWig.jl/actions?query=workflow%3ADocumentation+branch%3Amaster)

[![codecov](https://codecov.io/gh/BioJulia/BigWig.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/BigWig.jl)

## Contributing

We appreciate [contributions](https://github.com/BioJulia/BigWig.jl/graphs/contributors) from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the [contributing files](https://github.com/BioJulia/Contributing) detailed contributor and maintainer guidelines, and code of conduct.

### Financial contributions

We also welcome financial contributions in full transparency on our [open collective](https://opencollective.com/biojulia).

Anyone can file an expense.

If the expense makes sense for the development the core contributors and the person who filed the expense will be reimbursed.

## Backers & Sponsors

Thank you to all our backers and sponsors!

Love our work and community? [Become a backer](https://opencollective.com/biojulia#backer).

[![backers](https://opencollective.com/biojulia/backers.svg?width=890)](https://opencollective.com/biojulia#backers)

Does your company use BioJulia?

Help keep BioJulia feature rich and healthy by [sponsoring the project](https://opencollective.com/biojulia#sponsor).

Your logo will show up here with a link to your website.

[![](https://opencollective.com/biojulia/sponsor/0/avatar.svg)](https://opencollective.com/biojulia/sponsor/0/website)

[![](https://opencollective.com/biojulia/sponsor/1/avatar.svg)](https://opencollective.com/biojulia/sponsor/1/website)

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## Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on [Gitter](https://gitter.im/BioJulia/General), or you can try the [Bio category of the Julia discourse site](https://discourse.julialang.org/c/domain/bio).