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https://github.com/biojulia/bioalignments.jl
Sequence alignment tools
https://github.com/biojulia/bioalignments.jl
bam-files bioinformatics biojulia biology dna-sequences high-throughput-sequencing sam-files sequence-alignment sequence-analysis smith-waterman-alignment
Last synced: 14 days ago
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Sequence alignment tools
- Host: GitHub
- URL: https://github.com/biojulia/bioalignments.jl
- Owner: BioJulia
- License: mit
- Created: 2017-06-15T01:34:35.000Z (over 7 years ago)
- Default Branch: master
- Last Pushed: 2024-08-07T18:34:16.000Z (5 months ago)
- Last Synced: 2024-10-30T01:36:58.838Z (about 2 months ago)
- Topics: bam-files, bioinformatics, biojulia, biology, dna-sequences, high-throughput-sequencing, sam-files, sequence-alignment, sequence-analysis, smith-waterman-alignment
- Language: Julia
- Homepage:
- Size: 1.1 MB
- Stars: 60
- Watchers: 15
- Forks: 24
- Open Issues: 23
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Funding: .github/FUNDING.yml
- License: LICENSE
Awesome Lists containing this project
README
# 
BioAlignments.jl
[](https://zenodo.org/badge/latestdoi/94387480)
[](https://github.com/BioJulia/BioAlignments.jl/releases/latest)
[](https://github.com/BioJulia/BioAlignments.jl/blob/master/LICENSE)
[](https://biojulia.github.io/BioAlignments.jl/stable)
[](https://biojulia.github.io/BioAlignments.jl/dev)
[](https://www.repostatus.org/#active)
## Description
*BioAlignments.jl* provides sequence alignment algorithms and data structures.
## Installation
You can install *BioAlignments.jl* from Julia REPL in [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/):
```
pkg> add BioAlignments
```
If you are interested in the cutting edge of the development, please check out the [*master* branch](https://github.com/BioJulia/BioAlignments.jl/tree/master) to try new features before release.
## Testing
BioAlignments is tested against Julia `1.X` on Linux, OS X, and Windows.
**Latest build status:**
[](https://github.com/BioJulia/BioAlignments.jl/actions)
[](https://ci.appveyor.com/project/Ward9250/bioalignments-jl/branch/master)
[](https://codecov.io/gh/BioJulia/BioAlignments.jl)
[](https://github.com/BioJulia/BioAlignments.jl/actions/workflows/Downstream.yml)
## Contributing
We appreciate [contributions](https://github.com/BioJulia/BioAlignments.jl/graphs/contributors) from users including reporting bugs, fixing issues, improving performance and adding new features.
Take a look at the [contributing files](https://github.com/BioJulia/Contributing) detailed contributor and maintainer guidelines, and code of conduct.
### Special Thanks
- Peter Haverty
- GitHub [phaverty](https://github.com/phaverty)
### Financial contributions
We also welcome financial contributions in full transparency on our [open collective](https://opencollective.com/biojulia).
Anyone can file an expense.
If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.
## Backers & Sponsors
Thank you to all our backers and sponsors!
Love our work and community? [Become a backer](https://opencollective.com/biojulia#backer).
[](https://opencollective.com/biojulia#backers)
Does your company use BioJulia? Help keep BioJulia feature rich and healthy by [sponsoring the project](https://opencollective.com/biojulia#sponsor).
Your logo will show up here with a link to your website.
[](https://opencollective.com/biojulia/sponsor/0/website)
[](https://opencollective.com/biojulia/sponsor/1/website)
[](https://opencollective.com/biojulia/sponsor/2/website)
[](https://opencollective.com/biojulia/sponsor/3/website)
[](https://opencollective.com/biojulia/sponsor/4/website)
[](https://opencollective.com/biojulia/sponsor/5/website)
[](https://opencollective.com/biojulia/sponsor/6/website)
[](https://opencollective.com/biojulia/sponsor/7/website)
[](https://opencollective.com/biojulia/sponsor/8/website)
[](https://opencollective.com/biojulia/sponsor/9/website)
## Questions?
If you have a question about contributing or using BioJulia software, come on over and chat to us on [the Julia Slack workspace](https://julialang.org/slack), or you can try the [Bio category of the Julia discourse site](https://discourse.julialang.org/c/domain/bio).