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https://github.com/biojulia/kmeranalysis.jl
K-mer counting algorithms and count-data utilities for the BioJulia framework
https://github.com/biojulia/kmeranalysis.jl
biojulia kmer kmer-composition kmer-counting kmer-distribution kmer-frequency-count kmer-spectra kmers
Last synced: 26 days ago
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K-mer counting algorithms and count-data utilities for the BioJulia framework
- Host: GitHub
- URL: https://github.com/biojulia/kmeranalysis.jl
- Owner: BioJulia
- License: mit
- Created: 2020-03-02T10:49:01.000Z (almost 5 years ago)
- Default Branch: master
- Last Pushed: 2023-04-23T14:23:36.000Z (over 1 year ago)
- Last Synced: 2024-10-30T01:37:01.676Z (2 months ago)
- Topics: biojulia, kmer, kmer-composition, kmer-counting, kmer-distribution, kmer-frequency-count, kmer-spectra, kmers
- Language: Julia
- Homepage:
- Size: 5.4 MB
- Stars: 11
- Watchers: 9
- Forks: 5
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Funding: .github/FUNDING.yml
- License: LICENSE
- Codeowners: .github/CODEOWNERS
Awesome Lists containing this project
README
# 
KmerAnalysis
[](https://github.com/BioJulia/KmerAnalysis.jl/releases/latest)
[](https://github.com/BioJulia/KmerAnalysis.jl/blob/master/LICENSE)
[](https://biojulia.github.io/KmerAnalysis.jl/stable)
[](http://www.repostatus.org/#active)
[](https://gitter.im/BioJulia/KmerAnalysis.jl)
## Description
A k-mer counting and analysis tool-box for Julia.
Provides k-mer counting utilities, as well as k-mer spectra and coverage analysis routines.
## Installation
You can install KmerAnalysis from the julia REPL. Press `]` to enter pkg mode
again, and enter the following:
```
pkg> add KmerAnalysis
```
To add it to your environment.
You may also want the add-on package
[KmerAnalysisMakie.jl](https://biojulia.dev/KmerAnalysis.jl/stable), which
provides AbstractPlotting recipes for the types in this package.
## Testing
KmerAnalysis is tested against Julia `1.X` on Linux, OS X, and Windows.
**Latest build status:**
[](https://travis-ci.com/BioJulia/KmerAnalysis.jl)
## Contributing
We appreciate contributions from users including reporting bugs, fixing
issues, improving performance and adding new features.
Take a look at the [contributing files](https://github.com/BioJulia/Contributing)
detailed contributor and maintainer guidelines, and code of conduct.
### Financial contributions
We also welcome financial contributions in full transparency on our
[open collective](https://opencollective.com/biojulia).
Anyone can file an expense. If the expense makes sense for the development
of the community, it will be "merged" in the ledger of our open collective by
the core contributors and the person who filed the expense will be reimbursed.
## Backers & Sponsors
Thank you to all our backers and sponsors!
Love our work and community? [Become a backer](https://opencollective.com/biojulia#backer).
[](https://opencollective.com/biojulia#backers)
Does your company use BioJulia? Help keep BioJulia feature rich and healthy by
[sponsoring the project](https://opencollective.com/biojulia#sponsor)
Your logo will show up here with a link to your website.
[](https://opencollective.com/biojulia/sponsor/0/website)
[](https://opencollective.com/biojulia/sponsor/1/website)
[](https://opencollective.com/biojulia/sponsor/2/website)
[](https://opencollective.com/biojulia/sponsor/3/website)
[](https://opencollective.com/biojulia/sponsor/4/website)
[](https://opencollective.com/biojulia/sponsor/5/website)
[](https://opencollective.com/biojulia/sponsor/6/website)
[](https://opencollective.com/biojulia/sponsor/7/website)
[](https://opencollective.com/biojulia/sponsor/8/website)
[](https://opencollective.com/biojulia/sponsor/9/website)
## Questions?
If you have a question about contributing or using BioJulia software, come
on over and chat to us on [Gitter](https://gitter.im/BioJulia/General), or you can try the
[Bio category of the Julia discourse site](https://discourse.julialang.org/c/domain/bio).