https://github.com/biojulia/proteinsecondarystructures.jl

Wrapper to protein secondary structure calculation packages
https://github.com/biojulia/proteinsecondarystructures.jl

Last synced: about 1 year ago
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Wrapper to protein secondary structure calculation packages

• Host: GitHub
• URL: https://github.com/biojulia/proteinsecondarystructures.jl
• Owner: BioJulia
• License: mit
• Created: 2023-06-27T18:21:20.000Z (almost 3 years ago)
• Default Branch: main
• Last Pushed: 2025-04-03T17:01:36.000Z (about 1 year ago)
• Last Synced: 2025-04-11T12:51:38.137Z (about 1 year ago)
• Language: Julia
• Homepage:
• Size: 9.81 MB
• Stars: 12
• Watchers: 5
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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# ProteinSecondaryStructures.jl

This package parses [STRIDE]( http://webclu.bio.wzw.tum.de/stride/) and [DSSP](https://github.com/PDB-REDO/dssp) secondary structure prediction outputs, to make them convenient to use from Julia, particularly for the analysis of MD simulations. 

## Documentation

Go to: https://BioJulia.github.io/ProteinSecondaryStructures.jl

## Citations

If you use the `STRIDE` algorithm for secondary structure prediction, please cite:

- Frishman,D & Argos,P. (1995) Knowledge-based secondary structure assignment. Proteins: structure, function and genetics, 23, 566-579.

- Kabsch,W. & Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22: 2577-2637.

If you use the `DSSP` algorithm for secondary structure prediction, please cite:

- Joosten RP, te Beek TAH, Krieger E, Hekkelman ML, Hooft RWW, Schneider R, Sander C, Vriend A series of PDB related databases for everyday needs. Nuc. Acids Res. 2010; 39:D411-D419.

- Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983; 22:2577-2637.