https://github.com/biolink/biolink-model-toolkit

A collection of useful python functions for looking up information and working with the Biolink Model
https://github.com/biolink/biolink-model-toolkit

biolink biolink-model ncats-translator

Last synced: 2 days ago
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A collection of useful python functions for looking up information and working with the Biolink Model

• Host: GitHub
• URL: https://github.com/biolink/biolink-model-toolkit
• Owner: biolink
• License: bsd-3-clause
• Created: 2019-01-15T16:31:40.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2024-07-26T22:34:41.000Z (5 months ago)
• Last Synced: 2024-12-24T18:09:41.146Z (9 days ago)
• Topics: biolink, biolink-model, ncats-translator
• Language: Python
• Homepage: https://biolink.github.io/biolink-model-toolkit/
• Size: 6.73 MB
• Stars: 20
• Watchers: 6
• Forks: 11
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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# Biolink Model Toolkit

Biolink Model Toolkit (BMT): A Python API for working with the [Biolink Model](https://github.com/biolink/biolink-model).

BMT provides utility functions to look up Biolink Model for classes, relations, and properties based on Biolink CURIEs

or external CURIEs that have been mapped to Biolink Model.

> Note: Each release of BMT is pinned to a specific version of the Biolink Model to ensure consistency.

## Usage

BMT provides convenience methods to operate on the Biolink Model.

Using this toolkit you can,

- Get Biolink Model elements corresponding to a given Biolink class or slot name

- Get Biolink Model elements corresponding to a given external CURIE/IRI

- Get ancestors for a given Biolink Model element

- Get descendants for a given Biolink Model element

- Get parent for a given Biolink Model element

- Get children for a given Biolink Model element

- Check whether a given Biolink Model element is part of a specified subset