https://github.com/biomedical-imaging-group/deconvolutionlab2

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
https://github.com/biomedical-imaging-group/deconvolutionlab2

3d algorithms deconvolution images-plugins microscopy

Last synced: 3 months ago
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Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

• Host: GitHub
• URL: https://github.com/biomedical-imaging-group/deconvolutionlab2
• Owner: Biomedical-Imaging-Group
• License: gpl-3.0
• Created: 2018-06-06T19:08:59.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2019-03-09T16:40:03.000Z (almost 6 years ago)
• Last Synced: 2023-10-26T05:23:48.309Z (over 1 year ago)
• Topics: 3d, algorithms, deconvolution, images-plugins, microscopy
• Language: Java
• Homepage: http://bigwww.epfl.ch/deconvolution/deconvolutionlab2/
• Size: 2.3 MB
• Stars: 41
• Watchers: 9
• Forks: 15
• Open Issues: 5
• Metadata Files:
  • Readme: README.md
  • Changelog: HISTORY.md
  • License: LICENSE

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README

        
DeconvolutionLab2

=================

_Java software package for 3D deconvolution microscopy_

http://bigwww.epfl.ch/deconvolution/deconvolutionlab2/

## Outline

DeconvolutionLab2 is freely accessible and open-source for 3D deconvolution microscopy; it can be linked to well-known imaging software platforms, ImageJ, Fiji, ICY, Matlab, and it runs as a stand-alone application.

The backbone of our software architecture is a library that contains the number-crunching elements of the deconvolution task. It includes the tool for a complete validation pipeline. Inquisitive minds inclined to peruse the code will find it fosters the understanding of deconvolution.

At this stage, DeconvolutionLab2 includes a friendly user interface to run the following algortihms: Regularized Inverse Filter, Tikhonov Inverse Filter Naive Inverse Filter, Richardson-Lucy, Richardson-Lucy Total Variation, Landweber (Linear Least Squares), Non-negative Least Squares, Bounded-Variable Least Squares, Van Cittert, Tikhonov-Miller, Iterative Constraint Tikhonov-Miller, FISTA, ISTA.