https://github.com/biomedical-imaging-group/deconvolutionlab2
Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
https://github.com/biomedical-imaging-group/deconvolutionlab2
3d algorithms deconvolution images-plugins microscopy
Last synced: about 2 months ago
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Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
- Host: GitHub
- URL: https://github.com/biomedical-imaging-group/deconvolutionlab2
- Owner: Biomedical-Imaging-Group
- License: gpl-3.0
- Created: 2018-06-06T19:08:59.000Z (almost 7 years ago)
- Default Branch: master
- Last Pushed: 2019-03-09T16:40:03.000Z (about 6 years ago)
- Last Synced: 2025-03-21T18:08:56.929Z (2 months ago)
- Topics: 3d, algorithms, deconvolution, images-plugins, microscopy
- Language: Java
- Homepage: http://bigwww.epfl.ch/deconvolution/deconvolutionlab2/
- Size: 2.3 MB
- Stars: 55
- Watchers: 8
- Forks: 15
- Open Issues: 6
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Metadata Files:
- Readme: README.md
- Changelog: HISTORY.md
- License: LICENSE
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README
DeconvolutionLab2
=================
_Java software package for 3D deconvolution microscopy_
http://bigwww.epfl.ch/deconvolution/deconvolutionlab2/
## Outline
DeconvolutionLab2 is freely accessible and open-source for 3D deconvolution microscopy; it can be linked to well-known imaging software platforms, ImageJ, Fiji, ICY, Matlab, and it runs as a stand-alone application.
The backbone of our software architecture is a library that contains the number-crunching elements of the deconvolution task. It includes the tool for a complete validation pipeline. Inquisitive minds inclined to peruse the code will find it fosters the understanding of deconvolution.
At this stage, DeconvolutionLab2 includes a friendly user interface to run the following algortihms: Regularized Inverse Filter, Tikhonov Inverse Filter Naive Inverse Filter, Richardson-Lucy, Richardson-Lucy Total Variation, Landweber (Linear Least Squares), Non-negative Least Squares, Bounded-Variable Least Squares, Van Cittert, Tikhonov-Miller, Iterative Constraint Tikhonov-Miller, FISTA, ISTA.