https://github.com/bionode/bionode

Modular and universal bioinformatics
https://github.com/bionode/bionode

bioinformatics bionode metapackage nodejs os4openscience tools

Last synced: 3 months ago
JSON representation

Modular and universal bioinformatics

• Host: GitHub
• URL: https://github.com/bionode/bionode
• Owner: bionode
• License: mit
• Created: 2014-01-23T23:56:56.000Z (almost 11 years ago)
• Default Branch: master
• Last Pushed: 2019-11-19T13:26:33.000Z (almost 5 years ago)
• Last Synced: 2024-07-19T06:27:04.477Z (4 months ago)
• Topics: bioinformatics, bionode, metapackage, nodejs, os4openscience, tools
• Language: JavaScript
• Homepage: bionode.io
• Size: 696 KB
• Stars: 311
• Watchers: 36
• Forks: 39
• Open Issues: 15
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md

Awesome Lists containing this project

• Awesome-Bioinformatics - BioNode - Modular and universal bioinformatics, Bionode provides pipeable UNIX command line tools and JavaScript APIs for bioinformatics analysis workflows. [ [web](http://bionode.io) ] (Data Processing / Command Line Utilities)

README

        


  

    

  

  


  bionode.io



# bionode

> Modular and universal bioinformatics

[![npm](https://img.shields.io/npm/v/bionode.svg?style=flat-square)](http://npmjs.org/package/bionode)

[![Travis](https://img.shields.io/travis/bionode/bionode.svg?style=flat-square)](https://travis-ci.org/bionode/bionode)

[![Coveralls](https://img.shields.io/coveralls/bionode/bionode.svg?style=flat-square)](http://coveralls.io/r/bionode/bionode)

[![Dependencies](http://img.shields.io/david/bionode/bionode.svg?style=flat-square)](http://david-dm.org/bionode/bionode)

[![npm](https://img.shields.io/npm/dt/bionode.svg?style=flat-square)](https://www.npmjs.com/package/bionode)

[![Gitter](https://img.shields.io/gitter/room/nwjs/nw.js.svg?style=flat-square)](https://gitter.im/bionode/bionode)

## Install

You need to install the latest Node.JS first, please check [nodejs.org](http://nodejs.org) or do the following:

```bash

# Ubuntu

sudo apt-get install npm

# Mac

brew install node

# Both

npm install -g n

n stable

```

To use `bionode` as a command line tool, you can install it globally with `-g`.

```bash

npm install bionode -g

```

Or, if you want to use it as a JavaScript library, you need to install it in your local project folder inside the `node_modules` directory by doing the same command **without** `-g`.

```bash

npm i bionode # 'i' can be used as shorcut to 'install'

```

## Documentation

Check our documentation at [doc.bionode.io](http://doc.bionode.io)

## Modules list

For a complete list of bionode modules, please check the [repositories with the "tool" tag](https://github.com/search?q=org:bionode+topic:tool)

## Contributing

We welcome all kinds of contributions at all levels of experience, please read the [CONTRIBUTING.md](CONTRIBUTING.md) to get started!

## Communication channels

Don't be shy! Come talk to us :smiley:

* **Email** [[email protected]](mailto:[email protected])

* **Chat room** [http://gitter.im/bionode/bionode](http://gitter.im/bionode/bionode)

* **IRC** #bionode on Freenode

* **Twitter** [@bionode](http://twitter.com/@bionode)

## Who's using Bionode?

For a list of some projects or institutions that we know of, check the [USERS.md](USERS.md) file. If you think you should be on that list or know who should, let us know! :D

## Acknowledgements

We would like to thank all the people and institutions listed below!

* [bionode/people](https://github.com/orgs/bionode/people)

* [WurmLab](http://wurmlab.github.io)

* [Mozilla Science Lab](https://science.mozilla.org)